cytomining pycytominer issues

cytomining / pycytominer

Python package for processing image-based profiling data

https://pycytominer.readthedocs.io

BSD 3-Clause "New" or "Revised" License

80 stars 36 forks source link

issues

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build(deps-dev): bump tornado from 6.4.1 to 6.4.2

#480 dependabot[bot] closed 1 day ago
1
build(deps): bump aiohttp from 3.10.2 to 3.10.11

#479 dependabot[bot] closed 4 days ago
1
build(deps): bump codecov/codecov-action from 4 to 5

#478 dependabot[bot] closed 4 days ago
3
build(python): add python 3.13 compatibility

#477 d33bs closed 4 days ago
2
Add Python 3.13 compatibility

#476 d33bs opened 2 weeks ago
0
build(python): add python 3.12 compatibility

#475 d33bs closed 2 weeks ago
2
Updates for Python 3.12

#474 d33bs closed 2 weeks ago
1
build(deps): bump the python-packages group across 1 directory with 13 updates; retain cytominer-database 0.3.4

#473 dependabot[bot] closed 2 weeks ago
3
build(deps): bump the python-packages group across 1 directory with 15 updates

#472 dependabot[bot] closed 3 weeks ago
1
ci: exclude scipy, sqlachemy, pandas from groups updates

#471 kenibrewer closed 3 weeks ago
2
build(deps-dev): bump sphinx from 7.1.2 to 7.4.7

#470 dependabot[bot] closed 3 weeks ago
2
build(deps): bump sqlalchemy from 1.4.52 to 2.0.36; move to sqlalchemy.text for queries

#469 dependabot[bot] closed 2 weeks ago
5
build(deps-dev): bump pre-commit from 3.5.0 to 4.0.1

#468 dependabot[bot] closed 3 weeks ago
2
build(deps-dev): bump sphinx-autobuild from 2021.3.14 to 2024.10.3

#467 dependabot[bot] closed 3 weeks ago
1
build(deps): bump the python-packages group with 15 updates

#466 dependabot[bot] closed 3 weeks ago
2
build(deps): bump scikit-learn from 1.3.2 to 1.5.0

#465 dependabot[bot] closed 3 weeks ago
1
build(python): bump minimum Python version to 3.9

#464 d33bs closed 3 weeks ago
2
ci(dependabot): enable auto poetry updates

#463 d33bs closed 3 weeks ago
3
refactor(collate): deprecationwarning for `collate`

#462 d33bs closed 2 weeks ago
2
bump: version 1.2.0 -> 1.2.1

#461 d33bs closed 3 days ago
1
Modify `CITATION.cff` to conform to `cffconvert` formatting

#460 d33bs closed 1 month ago
2
Add deprecation notice for `collate`

#459 d33bs closed 2 weeks ago
0
ci(releases): constrain PyPI GitHub Actions release trigger types

#458 d33bs closed 1 month ago
2
ci(dependencies): update setup python action dependencies and dependabot settings

#457 d33bs closed 1 month ago
2
Avoid errors with multiple publish jobs on publishing GitHub releases

#456 d33bs closed 1 month ago
0
bump: version 1.1.0 → 1.2.0

#455 d33bs closed 1 month ago
2
Updating pyproject python versioning

#454 axiomcura closed 1 month ago
3
ci(pre-commit): format `pyproject.toml` with `pyproject-fmt`

#453 d33bs closed 1 month ago
2
FeatureRequest: Automated identification and removal of non-biologically variant features

#452 hwarden162 opened 1 month ago
17
Return `output` filepath `str` within pycytominer functions

#451 d33bs opened 2 months ago
0
Bug: Constrain python versioning within the `pyproject` file to match with CI

#450 axiomcura closed 1 month ago
0
Adding DOI to the code base

#449 axiomcura opened 2 months ago
6
Update error message and docs for `features` argument to clarify CellProfiler default expectations and how to handle non-CellProfiler data

#448 axiomcura closed 1 month ago
13
ci(codecov): correct codecov key typo

#447 d33bs closed 2 months ago
2
ci(codecov): add codecov token

#446 d33bs closed 2 months ago
2
build(deps): bump pre-commit/action from 3.0.0 to 3.0.1

#445 dependabot[bot] closed 2 months ago
2
build(deps): bump docker/build-push-action from 5 to 6

#444 dependabot[bot] closed 2 months ago
2
build(deps): bump peter-evans/dockerhub-description from 3 to 4

#443 dependabot[bot] closed 2 months ago
2
Increase test coverage for `collate`

#442 d33bs opened 2 months ago
1
Running Codecov on `main` triggers error about missing token

#441 d33bs closed 2 months ago
0
`SingleCells` parameter `sqlite_file` string results in AttributeError: 'Connection' object has no attribute 'cursor' with updated Pandas versions

#440 arka2696 opened 2 months ago
4
ci(mypy): add mypy check and adjust code for types

#439 d33bs closed 1 month ago
5
ci(dependabot): enable GitHub Actions updates

#438 d33bs closed 2 months ago
2
Add `mypy` type check linting

#437 d33bs closed 1 month ago
3
Use Dependabot (or similar) to check and automatically update Actions versions

#436 d33bs closed 2 months ago
0
Add Python 3.12 testing and support

#435 d33bs closed 2 weeks ago
0
Bump default Python used by CI to next minor version (Python 3.10)

#434 d33bs opened 2 months ago
0
Deprecate Python 3.8 usage within project

#433 d33bs closed 3 weeks ago
0
ci(codecov): fix errors with automated coverage

#432 d33bs closed 2 months ago
2
Re-enable code coverage analysis for PR's and latest commits

#431 d33bs closed 2 months ago
0