cytomining pycytominer issues

cytomining / pycytominer

Python package for processing image-based profiling data

https://pycytominer.readthedocs.io

BSD 3-Clause "New" or "Revised" License

75 stars 34 forks source link

issues

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WIP: Improve Documentation for Non-CellProfiler Datasets in Pycytominer

#430 axiomcura opened 1 hour ago
0
Add dark mode style color for contrast in docs

#429 d33bs opened 1 day ago
0
Increase color contrast for links color with rendered docs in dark-mode

#428 d33bs opened 4 days ago
0
FeatureRequest: Machine Learning Data Split Functionality

#427 MikeLippincott opened 2 weeks ago
3
build(deps): bump aiohttp from 3.9.4 to 3.10.2

#426 dependabot[bot] closed 3 weeks ago
0
build(deps-dev): bump webob from 1.8.7 to 1.8.8

#425 dependabot[bot] closed 3 weeks ago
0
build(deps-dev): bump setuptools from 69.2.0 to 70.0.0

#424 dependabot[bot] closed 1 month ago
0
build(deps-dev): bump zipp from 3.18.1 to 3.19.1

#423 dependabot[bot] closed 2 months ago
0
build(deps-dev): bump certifi from 2024.2.2 to 2024.7.4

#422 dependabot[bot] closed 2 months ago
0
bug(compartments): avoid lowercase compartment strings

#421 d33bs closed 2 months ago
1
build(deps): bump urllib3 from 1.26.18 to 1.26.19

#420 dependabot[bot] closed 2 months ago
0
build(deps-dev): bump requests from 2.31.0 to 2.32.2

#419 dependabot[bot] closed 2 months ago
0
GH Actions Docker errors for user credentials with login when triggered from Dependabot

#418 d33bs closed 2 months ago
3
build(deps-dev): bump tornado from 6.4 to 6.4.1

#417 dependabot[bot] closed 2 months ago
1
build(deps-dev): bump requests from 2.31.0 to 2.32.0

#416 dependabot[bot] closed 2 months ago
2
fix(pandas): add condition for pandas config

#415 d33bs closed 3 months ago
1
Bug: get an error in pycytominer/__init__.py it was fixed coming back to the previous commit

#414 PaulaLlanos closed 2 months ago
12
build(deps-dev): bump jinja2 from 3.1.3 to 3.1.4

#413 dependabot[bot] closed 2 months ago
1
Bug: `infer_cp_features()` Function Fails to Capture Features If the Compartment Name Contains Multi-Case Letters

#412 axiomcura closed 2 months ago
0
ci(runners): specify GitHub Actions Ubuntu runner image

#411 d33bs closed 4 months ago
1
Update `ubuntu-latest` to specific version for GH Actions os specifications

#410 d33bs closed 4 months ago
0
docs(docker): add docker installation instructions

#409 d33bs closed 4 months ago
1
ci(runners): update macos version for python

#408 d33bs closed 4 months ago
3
refactor(pd): avoid dataframe fragmentation in agg

#407 d33bs closed 4 months ago
1
Resolve MacOS Python setup issues within GitHub Actions runner images after recent update

#406 d33bs closed 4 months ago
0
build(deps): bump aiohttp from 3.9.3 to 3.9.4

#405 dependabot[bot] closed 4 months ago
0
FeatureRequest: address Pandas DataFrame fragmentation warnings from tests

#404 d33bs closed 4 months ago
0
build(deps): bump idna from 3.6 to 3.7

#403 dependabot[bot] closed 5 months ago
0
fix(poetry): add tool.setuptools_scm section

#402 d33bs closed 5 months ago
1
refactor(pandas): enable copy_on_write for Pandas

#401 d33bs closed 5 months ago
1
Add `tool.setuptools_scm` section to `pyproject.toml` file to avoid Poetry warnings

#400 d33bs closed 5 months ago
0
Complete Docker-Sponsored Open Source (DSOS) application process

#399 d33bs opened 5 months ago
2
fix(ci): docker image push readme updates

#398 d33bs closed 5 months ago
3
Isolate tests for Dockerfile builds using Poetry build includes/excludes

#397 d33bs opened 5 months ago
0
docs: add pydocsstyle linting and switch to mkdocs

#396 kenibrewer opened 5 months ago
1
fix(ci): docker image push fixes

#395 d33bs closed 5 months ago
4
[Refactor] Address S108 violations (unsafe /tmp usage) in `cyto_utils.collate`

#394 kenibrewer opened 5 months ago
0
[Refactor] Address S603 violations in pycytominer

#393 kenibrewer opened 5 months ago
0
[Refactor] Address S101 violations in cyto_utils

#392 kenibrewer opened 5 months ago
0
feat(dev): add improved makefile with additional helper commands

#391 kenibrewer closed 4 months ago
1
Align versioning of ruff in pre-commit and dev dependencies using local hooks

#390 kenibrewer opened 5 months ago
0
Refactor/apply isort linting checks

#389 kenibrewer closed 5 months ago
1
refactor: apply bugbears linting checks

#388 kenibrewer opened 5 months ago
0
refactor: apply bandit checks

#387 kenibrewer closed 5 months ago
1
refactor: update ruff to 0.3.4

#386 kenibrewer closed 5 months ago
1
Check if downloaded file is empty

#385 shntnu opened 5 months ago
1
FeatureRequest: Automatically generated dataframe schemas to catch errors

#384 kenibrewer opened 5 months ago
0
feat(core): add models and class for pycytominer core

#383 kenibrewer opened 5 months ago
6
bug: Failing docs build

#382 kenibrewer opened 5 months ago
4
dev: add docker-in-docker feature to devcontainer

#381 kenibrewer closed 5 months ago
1