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seq 10000 > 1-col
par < 1-col > multicol
seq 10010 > 1-col-ver2
The files 1-col multicol and 1-col-ver2 are more than 70% identical. But ssdeep sees multicol and 1-col as 0% identical…
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Hi All,
I'm new to running Canu and quite a novice at using terminal commands. I managed to get Canu installed on an iMac that I use for Nanopore sequencing. I am looking to run an assembly with Ca…
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I found this paper and looks promising: http://www.biorxiv.org/content/biorxiv/early/2017/08/25/180471.full.pdf
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Long running tasks are terminated on our login nodes, so I am trying to generate the sbatch scripts with `useGrid=remote`. Even though Canu correctly detects my slurm configuration, it just starts run…
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Hi, anybody could help me?
I have a problem with canu. I build a bash file, then I use "qsub" command to submit this task to our server. It always fails. So I use "bash" command to run this file dir…
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Hi,
I'm starting to use MinION sequencing to sequence ~450-550bp amplicons. This is done to set up a sensitive assay to get a complete viral genome in the end (with overlapping amplicons). I would …
BOM86 updated
6 years ago
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When there is so much feedback on this proposal from those who are aware and choose to speak at all and from members of the TC39 board itself that there are several things wrong with this proposal tha…
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Hi
I am running a canu (1.7) assembly of a plant genome (1.3gb) based on 11x PacBio reads. It all goes well till unitigging, when bogart fails with a segmentation fault.
I tried restarting and then …
ovidp updated
6 years ago
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Start a thread to gather inputs/comments/suggestions. @pluskid @tqchen @piiswrong @mli @jermainewang @szha
# Frontend Data Structures
## Classes
There are **two potential ways** to represent s…
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I just gotten a bizarre error with canu1.6 (downloaded from git on Oct17th). It seems canu is unable to detect the read type from my input command?
-nanopore-raw doesn't work either with the raw da…