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Hello.
Thanks for this awesome work.
I tested RDE-PPI on the chains C and B of PDB ID: 8TCG.
There is a critical Aspartic acid (D12) in chain C required for binding. It is involved in multiple Hydr…
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[Query cost/complexity validation/analysis](https://typegraphql.ml/docs/complexity.html) is not enough. See the following thread for more info: https://github.com/ravangen/graphql-rate-limit/issues/48…
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## Description
We need to decide which features should be implemented in version 2 of sc2reporter.
Below are some suggestions from end users.
## This can be closed when
- [ ] Decided what…
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Thanks for your great work! I found the MDS analysis plot on Fig. 4, could you show us the code of MDS analysis? I think this plot is very useful , and I would like to create same plot on my own data.…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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We could do type analysis before we mutate code using SemanticDB. Using type analysis, we can be sure a mutation is actually possible. Example: only mutate a `.filter` if the statement's type also has…
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With version 1.23.1, one of our positive controls which has been consistently called as B.1.118 suddenly gets called as B.1.
We're running pangolin 4.3 in usher placement mode, relevant versions are…
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In the long ARG (`upgma-mds-1000-md-30-mm-3-2022-06-30-recinfo-il.ts.tsz`):
```python
import tszip
import sc2ts
def report(*args, **kwargs):
display(*ti_long.node_report(*args, **kwargs))
…
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Is it somehow possible to enforce an MSI of 100% in my build pipeline?
I didn't found a solution. There is nothing mentioned in the docs. There is also no command line parameter, that would do what I'…
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**The bug**
golang VCF libraries will not read out VCFs.
According to a strict reading of the last few version of the VCF spec (https://samtools.github.io/hts-specs/VCFv4.2.pdf, https://samtools…