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Qcoverage fix
#386
newellf
closed
2 days ago
0
fix(qsv): fixing issue where references didn't match
#385
newellf
closed
5 days ago
0
perf(qpicard - cram): fork htsjdk to include performance enhancements for CRAM file reading
#384
holmeso
closed
1 month ago
0
refactor(qcoverage): minor java21 refactoring based on IDEA suggestions
#383
newellf
closed
1 month ago
0
Holmeso patch 1
#382
holmeso
closed
1 month ago
0
Update qmotif_1_2.md
#381
holmeso
closed
1 month ago
0
Update qmotif_1_2.md
#380
holmeso
closed
1 month ago
0
Qmotif revisit
#379
holmeso
closed
1 month ago
0
fix(qprofiler2): add ordering of readgroups in BamSummaryReport
#378
newellf
closed
1 month ago
0
perf(qmule:fastqtosamwithheaders): minor performance inmprovements
#377
holmeso
closed
2 months ago
0
fix(qsv and q3tiledaligner): fix for GRCh38
#376
newellf
closed
2 months ago
0
Qsv matefile
#375
newellf
closed
2 months ago
0
fix(qsv): fix file naming of matefile tmp files
#374
newellf
closed
2 months ago
0
Qcoverage blacklist
#373
newellf
closed
2 months ago
0
perf(qprofiler2): reduce calls to size on map
#372
holmeso
closed
3 months ago
0
refactor(qprofiler2): add bad option check for longread
#371
newellf
closed
4 months ago
0
fix(qbasepileup): chrM was automatically changed to chrMT
#370
newellf
closed
4 months ago
0
feat(qprofiler2 and qmule): adding isize and removing qname for qprof…
#369
felicity731
closed
4 months ago
0
Qprofiler2 longread
#368
felicity731
closed
4 months ago
0
Reproducing TelomereHunter's telomere content
#367
23Niklas
opened
5 months ago
0
docs(fixed typo in comment): fixed typo in comment
#366
newellf
closed
5 months ago
0
Doco update
#365
holmeso
closed
5 months ago
0
Documentation needs an update
#364
delocalizer
closed
5 months ago
0
refactor: minor java21 refactoring using IDEA suggestions for qsv tests
#363
newellf
closed
6 months ago
0
Minor java21 refactoring based on IDEA suggestions for qsv
#362
newellf
closed
6 months ago
0
refactor: minor java 21 refactoring of qsv packages
#361
newellf
closed
6 months ago
0
refactor: refactoring of qSV classes including those in util package
#360
newellf
closed
7 months ago
0
refactor: refactoring including removal of some unused parameters
#359
newellf
closed
7 months ago
0
Test branch felicity
#358
newellf
closed
7 months ago
0
style(qmule): minor changes
#357
holmeso
closed
7 months ago
0
perf(adamajava): ensure code that calls SAMRecord.getReadGroup() does so sparingly
#356
holmeso
closed
7 months ago
0
Update BamSummaryReport.java
#355
holmeso
closed
7 months ago
1
fix(qprofiler): don't assume type of SAM attribute
#354
holmeso
closed
7 months ago
1
qProfiler assumes optional ZM tag is an integer
#353
delocalizer
closed
7 months ago
1
refactor(qcommon): minor java21 refactoring as advised by IDEA
#352
holmeso
closed
7 months ago
0
Difficulty Extracting Telomere Length Data from qmotif XML Output
#351
CHOWDHURY098
opened
8 months ago
1
fix(qsv): qsv can now write CRAM files internally
#350
holmeso
closed
8 months ago
0
fix(qannotate): restore default value for HOM in confidence mode
#349
holmeso
closed
8 months ago
0
refactor(qannotate nanno): use long to store chr and position
#348
holmeso
closed
9 months ago
0
feat(qannotate confidence mode): allow the user to specify the homopolymer cutoff
#347
holmeso
closed
9 months ago
0
addition of hg38 telomere coordinates for qmotif
#346
squigzzz
opened
9 months ago
3
Request for qmotif Version Tag: March 31, 2021 Release (V3)
#345
Ansepil
closed
9 months ago
2
explicitly call the JAXBContextFactory implementation class
#344
holmeso
closed
9 months ago
0
fix(qsv): no jakarta bindings implementation available on classpath
#343
holmeso
closed
10 months ago
0
fix(qannotate): snpeff records were not being dealt with correctly
#342
holmeso
closed
10 months ago
0
build(all projects): gradle updates, now works with vscode
#341
holmeso
closed
10 months ago
0
Update htsjdk to 4.0.2
#340
holmeso
closed
1 year ago
0
feat(all projects): upgrade to java 21
#339
holmeso
closed
1 year ago
0
qcoverage - change jaxb jars to prepare for newer java versions
#338
holmeso
closed
1 year ago
0
feat(qmule): new classes for creating fastqs from BAMs and vice versa
#337
holmeso
closed
1 year ago
0
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