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Qprofiler2 longread
#368
felicity731
closed
1 day ago
0
Reproducing TelomereHunter's telomere content
#367
23Niklas
opened
1 month ago
0
docs(fixed typo in comment): fixed typo in comment
#366
newellf
closed
1 month ago
0
Doco update
#365
holmeso
closed
1 month ago
0
Documentation needs an update
#364
delocalizer
closed
1 month ago
0
refactor: minor java21 refactoring using IDEA suggestions for qsv tests
#363
newellf
closed
2 months ago
0
Minor java21 refactoring based on IDEA suggestions for qsv
#362
newellf
closed
2 months ago
0
refactor: minor java 21 refactoring of qsv packages
#361
newellf
closed
2 months ago
0
refactor: refactoring of qSV classes including those in util package
#360
newellf
closed
2 months ago
0
refactor: refactoring including removal of some unused parameters
#359
newellf
closed
2 months ago
0
Test branch felicity
#358
newellf
closed
2 months ago
0
style(qmule): minor changes
#357
holmeso
closed
2 months ago
0
perf(adamajava): ensure code that calls SAMRecord.getReadGroup() does so sparingly
#356
holmeso
closed
3 months ago
0
Update BamSummaryReport.java
#355
holmeso
closed
3 months ago
1
fix(qprofiler): don't assume type of SAM attribute
#354
holmeso
closed
3 months ago
1
qProfiler assumes optional ZM tag is an integer
#353
delocalizer
closed
3 months ago
1
refactor(qcommon): minor java21 refactoring as advised by IDEA
#352
holmeso
closed
3 months ago
0
Difficulty Extracting Telomere Length Data from qmotif XML Output
#351
CHOWDHURY098
opened
3 months ago
1
fix(qsv): qsv can now write CRAM files internally
#350
holmeso
closed
4 months ago
0
fix(qannotate): restore default value for HOM in confidence mode
#349
holmeso
closed
4 months ago
0
refactor(qannotate nanno): use long to store chr and position
#348
holmeso
closed
4 months ago
0
feat(qannotate confidence mode): allow the user to specify the homopolymer cutoff
#347
holmeso
closed
5 months ago
0
addition of hg38 telomere coordinates for qmotif
#346
squigzzz
opened
5 months ago
3
Request for qmotif Version Tag: March 31, 2021 Release (V3)
#345
Ansepil
closed
5 months ago
2
explicitly call the JAXBContextFactory implementation class
#344
holmeso
closed
5 months ago
0
fix(qsv): no jakarta bindings implementation available on classpath
#343
holmeso
closed
5 months ago
0
fix(qannotate): snpeff records were not being dealt with correctly
#342
holmeso
closed
5 months ago
0
build(all projects): gradle updates, now works with vscode
#341
holmeso
closed
6 months ago
0
Update htsjdk to 4.0.2
#340
holmeso
closed
7 months ago
0
feat(all projects): upgrade to java 21
#339
holmeso
closed
8 months ago
0
qcoverage - change jaxb jars to prepare for newer java versions
#338
holmeso
closed
10 months ago
0
feat(qmule): new classes for creating fastqs from BAMs and vice versa
#337
holmeso
closed
10 months ago
0
qprofiler1 / qvisualise - handle new fastq header
#336
holmeso
closed
1 year ago
0
associate CCM.TWO with value 2
#335
delocalizer
closed
1 year ago
0
NPE from au.edu.qimr.qannotate.utils.CCM.getControl
#334
delocalizer
closed
1 year ago
1
multi threading bug in XmlUtils.updateMapWithLimit
#333
holmeso
opened
1 year ago
0
Set xml namespaceURI in ctor
#332
holmeso
closed
1 year ago
4
qp2 kmers tweak
#331
holmeso
closed
1 year ago
0
org.qcmg.picard.SAMFileReaderFactory keeps spawning processes
#330
ZhaoxiangSimonCai
opened
1 year ago
7
New anno framework
#329
holmeso
closed
1 year ago
0
style(qcommon): addresses SpotBugs and some CheckStyle issues
#328
holmeso
closed
1 year ago
1
update sam writer factory to cope with CRAM file
#327
ChristinaXu2017
closed
1 year ago
2
fix(q3tiledaligner): bug in comparator caused IllegalArgumentException
#326
holmeso
closed
1 year ago
0
update SAMFileReaderFacotry
#325
ChristinaXu2017
closed
1 year ago
2
Default value for build (37) is always used in maf file
#324
holmeso
opened
1 year ago
0
feat(qsignature): add gene model information to snp positions vcf file
#323
holmeso
closed
1 year ago
0
close writer
#322
ChristinaXu2017
closed
2 years ago
0
create tool to rescue fastq reads with empty sequence
#321
ChristinaXu2017
closed
2 years ago
1
update MODE:add header line in remove mode
#320
ChristinaXu2017
closed
2 years ago
0
feat(qsv): use ref index to determine positions
#319
holmeso
closed
2 years ago
0
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