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Set xml namespaceURI in ctor
#332
holmeso
closed
1 year ago
4
qp2 kmers tweak
#331
holmeso
closed
1 year ago
0
org.qcmg.picard.SAMFileReaderFactory keeps spawning processes
#330
ZhaoxiangSimonCai
opened
1 year ago
7
New anno framework
#329
holmeso
closed
1 year ago
0
style(qcommon): addresses SpotBugs and some CheckStyle issues
#328
holmeso
closed
1 year ago
1
update sam writer factory to cope with CRAM file
#327
ChristinaXu2017
closed
1 year ago
2
fix(q3tiledaligner): bug in comparator caused IllegalArgumentException
#326
holmeso
closed
1 year ago
0
update SAMFileReaderFacotry
#325
ChristinaXu2017
closed
1 year ago
2
Default value for build (37) is always used in maf file
#324
holmeso
opened
2 years ago
0
feat(qsignature): add gene model information to snp positions vcf file
#323
holmeso
closed
2 years ago
0
close writer
#322
ChristinaXu2017
closed
2 years ago
0
create tool to rescue fastq reads with empty sequence
#321
ChristinaXu2017
closed
2 years ago
1
update MODE:add header line in remove mode
#320
ChristinaXu2017
closed
2 years ago
0
feat(qsv): use ref index to determine positions
#319
holmeso
closed
2 years ago
0
qmotif.ini
#318
sunna-0423
closed
2 years ago
7
qmotif - SEVERE org.qcmg.motif.CoverageJob - Exception caught in run method of CoverageJob java.lang.IllegalArgumentException: Invalid reference index -1
#317
ArashLab
closed
2 years ago
3
refactor(q3tiled_aligner): allow user to pass in cached ref index map
#316
holmeso
closed
2 years ago
1
Qsv q3ta bug fix
#315
holmeso
closed
2 years ago
0
fix(qsv): incorrect index value was being passed to method
#314
holmeso
closed
2 years ago
0
fix(q3tiledaligner): remove dependence on GRCh37
#313
holmeso
closed
2 years ago
2
qmotif - strange results when no includes are defined
#312
holmeso
closed
2 years ago
1
update document on qbasepileup
#311
ChristinaXu2017
closed
2 years ago
0
build(all): update htsjdk jar from 2.14.1 to 2.24.1
#310
holmeso
closed
2 years ago
3
Qpileup.view.bug
#309
ChristinaXu2017
closed
2 years ago
5
Q3ta options
#308
holmeso
closed
2 years ago
1
qsv featuring tiled aligner fails on GRCh38
#307
delocalizer
closed
2 years ago
1
options & usage for q3tiledaligner
#306
delocalizer
closed
2 years ago
2
input format issue on qbasepileup indel mode
#305
ChristinaXu2017
opened
2 years ago
0
input output format issue on qbasepileup coverage mode
#304
ChristinaXu2017
opened
2 years ago
0
input/output format issue on qbasepileup SNP mode
#303
ChristinaXu2017
closed
2 years ago
0
fix bug in qpileup view mode
#302
ChristinaXu2017
closed
2 years ago
0
continue on qmito.doc
#301
ChristinaXu2017
closed
2 years ago
0
q3tiled_aligner cleanup
#300
holmeso
closed
2 years ago
0
check isPresent before calling get on Optional
#299
holmeso
closed
2 years ago
1
tidy up qbasepileup
#298
ChristinaXu2017
closed
2 years ago
0
tidy up qmito
#297
ChristinaXu2017
closed
2 years ago
0
q3indel cleanup
#296
holmeso
closed
2 years ago
0
qsignature cleanup
#295
holmeso
closed
2 years ago
0
tidy up qcoverage
#294
ChristinaXu2017
closed
2 years ago
8
remove class loading
#293
holmeso
closed
2 years ago
0
Update import order in google_check.xml
#292
holmeso
closed
2 years ago
0
Qsignature - use cutoffs specified in options
#291
holmeso
closed
2 years ago
0
qp2 - use s3 aware reader
#290
holmeso
closed
2 years ago
0
qp2 produces different output with different threading options
#289
holmeso
opened
2 years ago
7
Qprofiler2.doc
#288
ChristinaXu2017
closed
2 years ago
0
update log message for qmule::QSamToFastq
#287
ChristinaXu2017
closed
2 years ago
0
add exception message to log file
#286
ChristinaXu2017
closed
2 years ago
0
Qsignature Compare - handle empty vcf files
#285
holmeso
closed
2 years ago
0
update document for qmule
#284
ChristinaXu2017
closed
2 years ago
0
Qsamtofastq
#283
ChristinaXu2017
closed
2 years ago
1
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