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update picard version
#282
ChristinaXu2017
closed
3 years ago
8
QSamToFastq.java exception
#281
ChristinaXu2017
opened
3 years ago
0
to fix merge mode bug
#280
ChristinaXu2017
closed
3 years ago
0
set thread to 1 in merge mode
#279
ChristinaXu2017
closed
3 years ago
0
reference file checking error in qpileup merge mode
#278
ChristinaXu2017
closed
3 years ago
0
thread issue in qpileup bootstrap and merge mode
#277
ChristinaXu2017
closed
3 years ago
0
Qpileup.option2
#276
ChristinaXu2017
closed
3 years ago
0
qpileup option update
#275
ChristinaXu2017
closed
3 years ago
1
create new qpileup document
#274
ChristinaXu2017
closed
2 years ago
1
check qsv output directory specified in INI file
#273
ChristinaXu2017
closed
3 years ago
0
Qsig remove tokenising
#272
holmeso
closed
3 years ago
0
Update messages.properties
#271
holmeso
closed
3 years ago
0
why is the test failing on the build box
#270
holmeso
closed
2 years ago
0
remove qprofiler/README to docs/qprofiler
#269
ChristinaXu2017
closed
3 years ago
2
create new qsv document
#268
ChristinaXu2017
closed
2 years ago
0
Qsv.option
#267
ChristinaXu2017
closed
3 years ago
0
qsignature - allow positions file to be streamed
#266
holmeso
closed
3 years ago
0
At least some of our VCFs are invalid according to the VCF spec.
#265
grendeloz
opened
3 years ago
7
Qprfiler2.doc
#264
ChristinaXu2017
closed
3 years ago
3
Qsv.doc
#263
ChristinaXu2017
closed
3 years ago
3
Qsignature - add 2 profiler classes to report on qsignature positions and qsignature output
#262
holmeso
closed
3 years ago
6
Qprofiler.doc
#261
ChristinaXu2017
closed
3 years ago
0
qsignature snp positions to be in vcf format
#260
holmeso
closed
3 years ago
0
Update pull_request_template.md
#259
holmeso
closed
3 years ago
1
moved ISizeCluster from internal repo to qmule
#258
holmeso
closed
3 years ago
4
document for qsv
#257
ChristinaXu2017
closed
3 years ago
1
bug fix in toString method of VcfRecord
#256
holmeso
closed
3 years ago
0
document update for qmotif
#255
ChristinaXu2017
closed
3 years ago
12
qsignature - allow snpPositions file to have headers
#254
holmeso
closed
3 years ago
0
update usage message on qbamfilter
#253
ChristinaXu2017
closed
3 years ago
2
qsignature documentation updated
#252
holmeso
closed
3 years ago
0
set default header discriminator hash
#251
ChristinaXu2017
closed
3 years ago
0
tidy up qio
#250
ChristinaXu2017
closed
3 years ago
0
delete and deprecate string and tab package in qio
#249
ChristinaXu2017
closed
3 years ago
0
qprofiler - Fastq mode can't convert String to Integer
#248
holmeso
opened
3 years ago
1
qsignature generator accepts gff3 input
#247
holmeso
closed
3 years ago
3
Vcf qio
#246
ChristinaXu2017
closed
3 years ago
2
Qannotate qio vcf
#245
ChristinaXu2017
closed
3 years ago
0
check isize values
#244
holmeso
closed
3 years ago
0
Q3indel qio vcf
#243
ChristinaXu2017
closed
3 years ago
0
create VcfFileReader based on RecordReader
#242
ChristinaXu2017
closed
3 years ago
0
Tidyup qsnp
#241
ChristinaXu2017
closed
3 years ago
0
Tidyup qannotate
#240
ChristinaXu2017
closed
3 years ago
0
q3tiledaligner synchronise adding to map
#239
holmeso
closed
3 years ago
0
q3tiledaligner - synchronise loading of reference to avoid race conditions
#238
holmeso
closed
3 years ago
0
Vcf qio
#237
ChristinaXu2017
closed
3 years ago
9
Gff3 qio
#236
ChristinaXu2017
closed
3 years ago
0
Qprofiler qio
#235
ChristinaXu2017
closed
3 years ago
0
Qsignature qio
#234
ChristinaXu2017
closed
3 years ago
0
Deprecated classes in qSignature
#233
ChristinaXu2017
closed
2 years ago
0
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