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Goal:
- get rid of SIRIUS THIRDPARTY dependency while still allowing to create e.g., web apps that is pinned to a working SIRIUS version
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- [ ] Put [videos](https://www.youtube.com/watch?v=v0iSJMGXGUg&ab_channel=MariusvandenBeek) and [slides](https://docs.google.com/presentation/d/1S4v9tY5muRLV6q15WgkGRN4uzn_ebXAF41CCum9hSKs/edit) on IW…
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They charge for prebuilds now -> unusable for us. I do not feel comfortable promoting them anymore.
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Hi Alexis
ms2_id and num_clustered_ms2 columns are missing in all csv output files when CENTWAVE is used, present however when openMS is used.
Also, I don't understand how the ms2_id informatio…
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# Issue
In timsTOF data we sometimes see m/z peaks that have a leading flank and do not have lower intensity peaks on both sides of the peak:
![Screenshot from 2021-11-26 12-27-11](https://user-i…
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`PSMFeatureExtractor` with default settings executes fine on the command line with the `idXML` input below [1]. But `PSMFeatureExtractor` crashes in `TOPPAS`. Tested on two Ubuntu installations and ma…
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I am a new openMS user trying to extract ion chromatograms from a large batch of mzML files acquired from an MS1-only qTOF instrument (Sciex), and to convert them to a plain-text format. I suspect I …
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Currently the output of SequenceCoverageCalculator looks like this
```
sp|P30520|PURA2_HUMAN(coverage%, #unique hits): 21.0526%, 8
sp|Q00577|PURA_HUMAN(coverage%, #unique hits): 7.14286%, 1
sp|P…
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There seem to be problems opening the 1D View on macOS Cataline. Confirmed on 2.4 release.
@oliveralka can you quickly check if that has already been fixed in current develop?
Summary after screen…
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A peptide spectral library is a curated, annotated database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identific…