-
At the moment we are finding that the slow stage of inference is `match_ancestors`, since it is only parallelized within an epoch (for ancestors at exactly the same age). This is because we need to ma…
-
Hi, I'm trying to convert the UK Biobank 200k Whole Exome Sequencing dataset to a single plink2 dataset:
```bash
#> plink2 --pmerge-list mergelist.txt --out /s/project/uk_biobank/processed/WES_200K/…
Hoeze updated
2 years ago
-
_tl;dr
The current variant index has several shortcomings that affect our production infrastructure, our ability to update it to a newer GnomAD version and our ability to consider rare variants withi…
-
Summary of request: Modify the information in an existing ROR record
Update record:
Name of organization: University Children’s Hospital Basel
ROR ID: https://ror.org/02nhqek82
Which part of the…
-
Hi,
In another issue (#355) you recommended using ldpred2 with summary stats from a GLM. The problem is we only have GLMM summary stats from pan-ukbb and it's not easy to get GLM stats for all the p…
-
## Overview
We have processed the GWAS summary statistics for many dozens of traits using a pipeline that performs functionally-informed fine-mapping with PolyFun. Overall this has been very succes…
-
**User story**
GPL-646 | Migrate t117-tools PSD LIMS infrastructure from eta to theta
**Who are the primary contacts for this story**
Rich L
Possibly Tom ?
**Acceptance criteria**
To be cons…
-
When running the command:
```
plink2 \
--bgen /well/ukbb-wtchg/v3/imputation/ukb_imp_chr${chr}_v3.bgen ref-unknown \
--sample /well/ckb/shared/ukb_dataset_210403/ukb22828_c1_b0_v3_…
sahwa updated
2 years ago
-
Hello Dr. Privé,
I am trying to generate polygenic risk scores with LDpred2's automatic model and have encountered some problems. I have got LDpred2 running without error and produced a set of resu…
-
Hey everyone, I just have a question about my preprocessing in rfMRI signal.
The question is about getting time-series data of the rfMRI. I am wondering how should I get my time-series results? Wh…