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For specific primer design and the detection of mispriming primers, it is typically necessary to utilize specialized bioinformatics tools or libraries. These tools take into account the characteristic…
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**Describe the problem**
It would be great to add the large molecule fluorescent protein task introduced [here](https://arxiv.org/abs/2203.12742) as a molecular generation oracle. Code is available […
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I have installed MultiGuideScan in a conda environment with the following dependencies installed: python==2.7.16, scikit-learn==0.16.1, coreutils, rename, biopython==1.66, pysam==0.8.3, pyfaidx==0.4.7…
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Hello Flexidot team,
I can't use the software, it kept giving an error. Here is it:
```
$ python2 ../flexidot/code/flexidot_v1.05.py -h
Installing Python module: matplotlib
python -m pip ins…
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[Leon](https://github.com/GATB/leon) is a software to compress Next Generation Sequencing data. It can compress Fasta or Fastq format; plain text and gzipped files are supported. In comparative testi…
jdvne updated
2 years ago
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I've been using the Biopython version 1.66.win32-py2.7. I noticed two issues when constructing a UPGMA tree:
1. The tree is not ultrametric. This issue was also noted on stack overflow: [http://st…
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There is some inconsistency in exception handling between Python and Biopython when parsing files.
This is what happens in Python (using the binary file `310.ab1` in `Tests/Abi` as an example):
``…
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I get several error messages running the PPD script:
```
# sed: can't read : No such file or directory
# sed: can't read : No such file or directory
...
# ERROR: The sequences in the input alig…
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I would like to propose introducing type annotations to BioPython.
For those unfamiliar, type annotations are specified by [PEP 484](https://www.python.org/dev/peps/pep-0484/) and add static type-c…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
3.8.10 (default, Nov 22 2023, 10:22:35)
CPython
Linux-6.0.12-76060012-generic-x86_6…