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Leaving aside the issue of the DSL, the format emitted by the translator needs work.
Currently we have a `PhotoBlob` that carries `author`, which gets unset (OrientDB chokes on embedded objects) and …
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Hello,
thanks for your great product!
I've encountered a bug recently: some edges won't display even if they were well defined in the initial JSON.
In fact, it was because these particular edges has…
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For example, a fresh test pcviz at pathwaycommons.baderlab.org/pcviz/ (that connects to PC2v8 and have no cache yet) can barely process some gene symbols, such as CYP26A1 (it takes a lot of minutes to…
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All the edges in this graph (http://graphspace.org/graphs/ategge%40vt.edu/LSEC-sansKC-GSEA-leading-edge-enriched-genesets-mcmcBPN-rat-STRING-updatedGS-045/?layout=Final_Layout) are undirected (i.e., "…
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Hi,
I am creating a graph app using dagre layout. I want this graph to be interactive, so I am using two cytoscape instances as described in this answer: http://stackoverflow.com/questions/28319490/…
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In addition to the JSON model that is visualized by the visdag widget, we should also have a javascript graph api so adding, deleting nodes, defining new edges, etc.
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I've been working to use cytoscape in a React application. In React I have one component that handles the graph, but this has created issues. React views are declarative, but with cytoscape, individu…
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I am trying to use the labels attributes (http://js.cytoscape.org/#style/labels). In particular, I am trying to put thick outlines around the text (text-outline-width=2) and make this the same color …
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Many bioinformaticians require entire dumps (rather than REST queries that return N results at a time).
In some ways this isn't SciGraph's concern as currently the data comes from a uniform set of RD…
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Steps to reproduce:
1. Save a json from some graph with compound nodes (http://jsbin.com/gist/5b192c88616af2f75344?js,output)
2. load the saved json ( `$('#cy').cytoscape(JSON.parse(json))`)
TypeErro…