issues
search
PathwayCommons
/
pcviz
Pathway Commons Bio Network Visualizer
http://www.pathwaycommons.org/pcviz/
MIT License
8
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Can I export the network as a data file to further analyze it?
#45
sakura7621
opened
3 years ago
0
Download PNG broken
#44
jvwong
opened
5 years ago
0
cBioPortal webservice not working
#43
jjgao
closed
5 years ago
1
updated cBioPortal web service url
#42
jjgao
closed
5 years ago
0
No network found (displayed)
#41
IgorRodchenkov
opened
6 years ago
0
Upgrade Cytoscape.js
#40
maxkfranz
opened
6 years ago
0
Improve stylesheet
#39
maxkfranz
opened
6 years ago
0
Improve layout
#38
maxkfranz
opened
6 years ago
1
Reduce haystack radius
#37
maxkfranz
opened
6 years ago
0
Query gene should always be included in the network
#36
gbader
opened
6 years ago
1
Networks cache bug: too long name
#35
IgorRodchenkov
closed
7 years ago
1
Pcviz boot
#34
IgorRodchenkov
closed
7 years ago
0
Performance: Download -> Network(SIF) could return previously generated SIF data
#33
IgorRodchenkov
closed
8 years ago
0
Context cannot be loaded.
#32
IgorRodchenkov
closed
8 years ago
3
on an iPhone/iPad, pressing/clicking on a node usually does not update the Details view
#31
IgorRodchenkov
opened
8 years ago
0
Save or permanently cache networks (.json)
#30
IgorRodchenkov
closed
7 years ago
1
it's almost impossible for some genes
#29
IgorRodchenkov
closed
8 years ago
13
More SIF types are listed than we actually use
#28
IgorRodchenkov
closed
8 years ago
2
Cocitations filter seems to be broken
#27
IgorRodchenkov
closed
8 years ago
2
Query/network processing begins too soon and gets unwanted intermediate results.
#26
IgorRodchenkov
closed
8 years ago
3
initial home view with a random gene URL
#25
IgorRodchenkov
closed
8 years ago
2
uniprot_scraper.sh error: StackOverFlow (endless loop)
#24
IgorRodchenkov
closed
8 years ago
1
uniprot_scraper.sh error (log): undefined is not an object
#23
IgorRodchenkov
closed
8 years ago
1
Scraper fixes and documentation
#22
armish
closed
8 years ago
0
uniprot_scraper.sh error (cannot calculate network neighborhoods for each gene)
#21
IgorRodchenkov
closed
8 years ago
1
Make it use blacklist.txt
#20
IgorRodchenkov
closed
8 years ago
1
Better document preparing the cache for pre-calculated networks
#19
armish
closed
8 years ago
0
optimize/cleanup pcviz.properties.example
#18
IgorRodchenkov
closed
8 years ago
1
Malformed URL for downloading BioPAX model
#17
IgorRodchenkov
closed
8 years ago
1
Fix the syntax for travis.yml
#16
armish
closed
9 years ago
0
add support for Travis testing
#15
armish
closed
9 years ago
0
BioJS demo page doesn't work
#14
armish
closed
9 years ago
3
Uniprot description NULL
#13
sajmmon
closed
8 years ago
2
PCViz: Collect view/usage stats for data source specific edges/information
#12
IgorRodchenkov
closed
8 years ago
1
new query - by pathway URI
#11
IgorRodchenkov
closed
8 years ago
2
PCViz: cannot download/print a network as Image (PNG)
#10
IgorRodchenkov
closed
7 years ago
3
PCViz: Show data sources and their versions
#9
IgorRodchenkov
closed
7 years ago
1
Rename filtering operations
#8
IgorRodchenkov
closed
9 years ago
2
PCViz: support uniprot IDs as input
#7
IgorRodchenkov
closed
8 years ago
1
adjusting the number of iterations required before the layout is terminated
#6
IgorRodchenkov
closed
7 years ago
1
dynamic screen size for improved layout
#5
IgorRodchenkov
closed
8 years ago
3
support link-ins with uniprot id in them
#4
IgorRodchenkov
closed
6 years ago
2
settings for which nodes are visible/hidden are being lost in full screen
#3
IgorRodchenkov
closed
7 years ago
3
data source information for sif edges
#2
IgorRodchenkov
closed
7 years ago
2
to hide paths-between choice when < 2 genes typed
#1
IgorRodchenkov
closed
7 years ago
1