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Current definition is:
Glutamate-ammonia ligases catalyze the reaction: L-glutamate + ATP + NH(4)(+) = L-glutamine + ADP + 2 H(+) + phosphate
[Xref is to EC:6.3.1.2]
I think "NH(4)" should be "NH…
sjm41 updated
3 years ago
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There are ~20 GO terms with an xref to the partial EC number 2.7.11 (Protein-serine/threonine kinases)
https://enzyme.expasy.org/EC/2.7.11.-
I think only one of these xrefs is appropriate - the re…
sjm41 updated
3 years ago
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EC:3.2.2.- is a grouping term for "Hydrolases -> Glycosylases -> Hydrolyzing N-glycosyl compounds":
https://enzyme.expasy.org/EC/3.2.2.-
So it's correct to be on the first term below, but I think …
sjm41 updated
3 years ago
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Hi,
As you know, we are moving from in-house keywords to EDAM in ExPASy. One of our resource providers, Vincent Zoete, who develops resources such as SwissDock, and who is in the molecular modellin…
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Hi,
There are three GO terms with EC:4.1.99.5 in the xref and/or definition line.
I think one or two of these EC mentions need to be removed, but the situation is a bit unclear (to me).
Would app…
sjm41 updated
3 years ago
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EC xref for GO:0033897 was changed from EC:3.1.27.1 to EC:4.6.1.19 (see entry copied below)
Comments at https://enzyme.expasy.org/EC/4.6.1.19 include:
- The enzyme catalyzes a two-stage endonucle…
sjm41 updated
3 years ago
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The EC xref on the following term should be EC:7.3.2.3
[Term]
id: GO:0015419
name: ABC-type sulfate transporter activity
namespace: molecular_function
def: "Enables the transfer of a solute or …
sjm41 updated
3 years ago
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EC:1.1.1 is a grouping ID (https://enzyme.expasy.org/EC/1.1.1.-) and is correctly an xref on this corresponding GO term:
id: GO:0016616
name: oxidoreductase activity, acting on the CH-OH group of …
sjm41 updated
3 years ago
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It is possible to get sequence from UniProt but I don't seem to be able to find a way to predict physical and chemical properties of protein from protein sequence with BioJava.
The online service for…
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Currently we have this:
**id: GO:0008242
name: omega peptidase activity
def: "Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (pep…
sjm41 updated
3 years ago