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How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…
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Hello,
I’m having problems using the breakaway function on my data.
I am analyzing 458 gut microbiome.
When I use the function sample_richness() on data counts at the family and species levels ever…
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My home directory in the HPC has only 5G space. I managed to setup my conda installation directory to my scratch directory which has enough space. I do not have problem with conda installation of ngl…
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Hi Frederick,
Thanks for developing the tool for compositional data.
I am new to microbiome analysis and trying to understand the output result from ANCOM-BC
I was trying use the data to ident…
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Hi,
I am trying to re-run the memote meta analysis you so kindly and reproducibly shared.
However, when I run `make plots` on the cluster I run into problems with the docker commands:
```
$ m…
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Here I will consider how to address objections raised by Werner Ceuster, and the Apollo-SV team, to IDO _host role_
_host role_ =def Role borne by an organism in virtue of the fact that its extende…
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Hi there,
I'm writing a scientific paper that's about some chemicals that use "[]" in their names. For example, "benzo[a]pyrene" or "B[a]P". I'd like to be able to not have to continually type thi…
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**Question**
While using the prescribed annotator and trying to fine-tune the model I keep on getting this error.
This is the annotator I used from haystack
https://annotate.deepset.ai/
While fo…
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Carried from https://github.com/obi-ontology/obi/issues/990
Prev ticket #22
Add microbiome as synonym of microbial community
I would argue for exact synonym: but there is an argument that mic…