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ngless-toolkit / ngless

NGLess: NGS with less work

https://ngless.embl.de

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Inconsistency in folder naming in documentation

#155 Vedanth-Ramji closed 1 year ago
0
To use the motus module for newer versions, you need to download it and import it with 'local import'

#154 zckoo007 opened 2 years ago
1
fd:12: hPutBuf: resource vanished (Broken pipe)

#153 uloeber opened 2 years ago
0
sdist lacks files necessary to run test suite

#152 sternenseemann closed 2 years ago
2
NGLess contain the adapter removel or not?

#151 timeresistance1996 closed 2 years ago
7
NGless v2.5 URL was not found while running it for the first time

#150 evilvenom closed 2 years ago
2
update smoothtrim: even window size

#149 mkuhn closed 2 years ago
1
Documentation for smoothtrim

#148 mkuhn closed 2 years ago
0
ngless-1.3.0-bwa not found

#147 liuxianghui closed 3 years ago
3
Build static Linux image with GitHub Actions

#146 unode closed 3 years ago
0
custom pattern recognition load_fastq_directory

#145 uloeber opened 3 years ago
1
error message write ofile

#144 uloeber closed 3 years ago
1
Loading map file gmgc emapper2 annotations fails

#143 uloeber closed 3 years ago
4
Error ir mapping step

#142 chodarq opened 3 years ago
7
Parallel module exits with error, if the data are not in the same directory as the script

#141 vpuller closed 3 years ago
2
Home directory does not have enough space for ngless

#140 liuxianghui closed 3 years ago
8
Feature request: Filter mapped reads by minimum match fraction

#139 luispedro opened 3 years ago
0
Using collect on countables from mapstats gives a funny result

#138 mettejoe opened 3 years ago
0
Github Actions Test mac

#137 psj1997 closed 4 years ago
3
Better debug message for files missing for collect()

#136 unode opened 4 years ago
0
Introduce computation stages - validation, download, prepare, ...

#135 unode opened 4 years ago
1
Error while generating reports for mOTUs. (fails integration tests)

#134 nairsajjal closed 2 years ago
2
No HTML report is generated when using the parallel module

#133 unode opened 4 years ago
2
Added references to developer test scripts

#132 nairsajjal closed 4 years ago
0
Update Documentation: Add developer test details on how new developers can test .ngl scripts

#131 nairsajjal closed 4 years ago
2
Added reference to the whats-new section for NGless V1.1.0

#130 nairsajjal closed 4 years ago
1
Update Documentation: regarding the developer docs change in accordance with Ngless Version 1.1.0

#129 nairsajjal closed 4 years ago
2
Console throws an error while activating ngless environment

#128 dmahajan980 closed 4 years ago
1
load_mocat_sample fails when given file names with multiple pair identifiers

#127 jakob-wirbel closed 4 years ago
2
Add read_length() to ShortRead type

#126 unode opened 4 years ago
2
Installation issue on Mac

#125 dkinkj closed 3 years ago
10
Broken pipe with samtools view upon conversion from minimap2 SAM -> BAM

#124 unode opened 4 years ago
1
ngless complains about igc version

#123 ycl6 closed 2 years ago
1
Docs for load_mocat_sample

#122 mkuhn closed 4 years ago
2
Error: resource vanished (Broken pipe)

#121 ycl6 closed 4 years ago
4
load_mocat_sample - missing pair.2 fails, missing pair.1 succeeds

#120 unode closed 4 years ago
5
Implement readset return type types for modules

#119 mkuhn opened 5 years ago
2
Output unmapped PE fastq files

#118 ycl6 closed 5 years ago
1
Inconsistent use of `local import`

#117 unode opened 5 years ago
1
Reading .bz2 files fails to decompress or segfaults

#116 unode opened 5 years ago
14
Reading in fastq.gz files

#115 luispedro closed 4 years ago
8
Update documentation for motus profiling to reflect motus2

#114 theavanrossum opened 5 years ago
3
Requesting qcstats when none exist fails

#113 unode closed 2 years ago
0
Allow collect()'ing when all processing is complete

#112 unode opened 5 years ago
2
Fix CIGAR size calculation for insertions

#111 unode closed 5 years ago
6
Default zstd compression breaks streaming

#110 unode closed 5 years ago
0
Reinjected sequences on matches containing inserts are invalid according to samtools

#109 unode closed 5 years ago
0
Reference data includes bwa indices under incorrect name

#108 unode closed 2 years ago
2
ngless --install-reference-data defaults to script version 0.0

#107 unode closed 2 years ago
0
Reference genomes not available Mus musculus

#106 kunstner closed 5 years ago
6