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Hello,
I worked for many month in a model with an earlier version of cobra and saved all the results on excel spreadsheets, and it never had any issue. However, I changed my laptop and after installi…
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In lines 38,39,51,52 of updateCobraToolbox.m should be = instead of ==
This prevents updating CTB from matlab. Correcting the code makes it work but still can't update because it complains that there…
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The sampleSCatterMatrix function does not plot the correlation coefficients. If lines 143-144 have the comment symbol removed, it does plot the coefficients.
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I've been looking at detectDeadEnds, and when setting removeExternalMets to 1, the behavior seems to be buggy.
All examples are from human RECON 2 website.
Right now, setting it to true would remove a…
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http://sagebase.org/events/congress-2017/
hashtag: [#SageAssembly](https://twitter.com/search?vertical=default&q=sageassembly%20OR%20(sage%20AND%20(assembly%20OR%20congress%20PR%20bio))%20OR%20sage…
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Dear Dr. Fleming,
After installing Gurobi, and after initializing Cobra, I run testAll. This gives an error message somewhere half way. I found out that the problem is with testModels. I have noticed…
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The original GIMME article (http://dx.plos.org/10.1371/journal.pcbi.1000082) uses a weighted penalty when re-enabling flux in reactions that do not have genes expressed.
The penalty is weighted by exp…
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To reproduce:
1. Upload emx_all_datatypes.xlsx "TypeTest" in package "org_molgenis_test" --> OK
2. Upload emx_all_datatypes.xlsx "TypeTest" in package "org_molgenis" --> ERROR
Message:
Import failed
…
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trf_rate is not calculating correctly because the function block.calcSweepTime() (called in line 53 in process.calcTuningCruves.m) is not adapted for AMS (it is though correct for FMS). The calculatio…
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#### Expected behaviour
Name: Jimmy Porich
Dept: External Relations/MDHS
Issue: Expecting the jump navigation to halt above all footer content when scrolling down on research pages.
#### Actual behav…