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Louis Nyffenegger informed me of the [OWASP XXE Processing Vulnerability](https://www.owasp.org/index.php/XML_External_Entity_%28XXE%29_Processing).
The proposed solution is to configure the dom pars…
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The parser needs to be adapted anyways. It should also output the date of the publication, however; we don't really want stuff before 2000.
Additionally, currently our sentences and sentences_input k…
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When running gs_read(), getting the following error:
Error in readr::read_csv(x, readr::locale(encoding = encoding), ...) :
unused argument (na.strings = c("", "NA"))
Worked fine for months. This…
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we need to load in the common disease associations.
the repo is here: https://github.com/monarch-initiative/hpo-annotation-data
@drseb this seems to be a mixture of all the diseases. will you be sp…
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A few random lines from the genes table are FULL of "for", "was" etc.
I think the problem can be solved very simply by now making a distinction between all-uppercase and upper/lower case matching whe…
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Hi there.
I can't seem to get any other locale other than en-US. To my knowledge, I'm supplying the CSL.engine with the correct functions to retrieve the locale, but it just isn't happening.
Here …
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We need to capture four fields.
1. Target author's affiliation(s) in PubMed
2. Target author's affiliation(s) in Scopus; including city and country if not the United States and Scopus's institutional …
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I am a litter confused about the schema of sentences table.
In tutorial, Step 3 said "Create the input data schema by running: ./util/create_input_schema.sh (NOTE that this will drop any input data a…
senwu updated
9 years ago
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```
What steps will reproduce the problem?
1. Read in a mitab line via PsimiTabReader
2. Convert the Collection of BinaryInteraction to an EntrySet using the
Tab2Xml converter
3. Convert the EntrySet…