monarch-initiative dipper issues

monarch-initiative / dipper

Data Ingestion Pipeline for Monarch

https://dipper.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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issues

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biolink-model.owl.ttl is moving locations on github

#1016 sierra-moxon opened 7 months ago
0
CVE-2007-4559 Patch

#1015 TrellixVulnTeam opened 1 year ago
0
Fix STRING_DWN

#1014 RichardBruskiewich opened 2 years ago
0
Update to use clean gene tsv

#1013 kshefchek closed 2 years ago
0
Switch to SSH for private repo pull

#1012 kshefchek closed 2 years ago
0
Where/how can I access ChemicalSubstance associations?

#1011 ehinderer closed 2 years ago
1
xenbase prototype

#1010 kshefchek closed 3 years ago
0
Oddities with source names in QC

#1009 kshefchek closed 3 years ago
0
IMPC

#1008 TomConlin closed 3 years ago
0
Flybase files missing

#1007 TomConlin opened 3 years ago
0
Parse forward slashes in gwas catalog

#1006 kshefchek opened 3 years ago
1
ClinVar

#1005 TomConlin closed 3 years ago
0
add new variant type 'haplotype, single variant'

#1004 kshefchek closed 3 years ago
1
Skip normal phenotypes in MGI

#1003 kshefchek closed 3 years ago
1
Split PATO namespaces

#1002 RichardBruskiewich closed 3 years ago
1
Fix WormBase prefix URI to Identifiers.org entry

#1000 RichardBruskiewich closed 3 years ago
1
DOID -> MONDO

#999 TomConlin closed 3 years ago
0
OMIA uses obsolete disease class

#998 cmungall closed 3 years ago
4
remove pseudo-blank nodes in OMIA

#997 cmungall opened 3 years ago
0
mode of inhertance in OMIA

#996 cmungall opened 3 years ago
0
update common taxa in jenkins

#995 kshefchek closed 3 years ago
3
Fix RGD and Xenbase gene to ensembl gene equivalence

#994 kshefchek opened 3 years ago
2
dot-qc color change

#993 TomConlin closed 3 years ago
0
special handling for transcript IDs in reactome

#992 kshefchek opened 3 years ago
0
change dipper cache host

#991 kshefchek closed 3 years ago
3
Go: fix list gaf list parsing

#990 TomConlin closed 3 years ago
0
AnimalQTL updates

#989 TomConlin closed 3 years ago
1
change author to monarch init

#988 kshefchek closed 3 years ago
0
disease phenotype clique merging

#987 kshefchek opened 3 years ago
1
update tems&labels, add a new mouse

#986 TomConlin closed 3 years ago
0
IMPC: adapt to their Version 12

#985 TomConlin closed 3 years ago
0
Adendum II to PR #982 (Digest bnode ids & refactor)

#984 TomConlin closed 3 years ago
0
Adendum to PR #982 (Digest bnode ids & refactor)

#983 TomConlin closed 3 years ago
1
Digest bnode ids & refactor

#982 TomConlin closed 3 years ago
0
Coriell cell type term; Jenkins reorder; dublin core

#981 TomConlin closed 3 years ago
0
add inverse property paths for symmetric predicates

#980 kshefchek closed 3 years ago
0
Disambiguate dcat:Distribution from dcat:distribution

#979 nicholsn closed 3 years ago
0
Change type of flybase alleles from allele (GENO:0000512) to variant allele (GENO:0000002)

#978 kshefchek opened 3 years ago
0
infer categories sparql should account for symmetry of equiv/sameAs relations

#977 cmungall closed 3 years ago
1
KEGG refactor & OMIA fix

#976 TomConlin closed 3 years ago
0
NCBI:

#975 TomConlin closed 3 years ago
0
Orphanet via Model.py discourage CURIE/URI objects as RDF literals

#974 TomConlin closed 3 years ago
0
remove category from G2D

#973 kshefchek closed 3 years ago
1
Disease-gene mixups for biolink:categories in OMIM ingest

#972 kshefchek closed 3 years ago
3
Eq and taxon bugs

#971 kshefchek closed 3 years ago
1
omim.ttl has a broken dc:description declaration (illegal punning)

#970 matentzn closed 3 years ago
6
omim.ttl has multiple labels on classes

#969 matentzn opened 3 years ago
3
Globally replace the 'dc:' namespace with the 'dcterms:' namespace

#968 TomConlin closed 3 years ago
0
Curie without reference in ucscbands

#967 kshefchek opened 3 years ago
0
OrphaNumber now Orphacode?

#966 drseb closed 3 years ago
12