-
### Expected behavior
Kaiju can generate output that includes taxonomic classifications below the genus level.
### Actual behavior and steps to reproduce the behavior
The current kaiju steps i…
-
Hi!
We encountered this error when trying to run `anvi-import-taxonomy` with the default matrix parser. We created a tab-delimited file according to the instructions at http://merenlab.org/2016/06/…
-
Hi Joey,
I have had a similar issue to the one mentioned in #223 . I created my own taxonomic string with these functions:
split_species = function(string, n = 2) {
splits = str_split(string, "…
-
I tried running sunbeam after setting up contaminant filtering and taxonomic classification. I did not set up contig annotation or reference mapping. I got the following error message:
(sunbeam) …
-
Splitting this out from https://github.com/ArctosDB/arctos/issues/1094 in hopes of quick resolution.
Should we update taxon relations using https://docs.google.com/spreadsheets/d/1S9tRAtgJQjCTTYKan…
-
I am working to add appropriate definitions to the Taxon Status code table.
Is anyone opposed to changing "invalid" to "invalid/unaccepted" and "valid" to "valid/accepted"?
I propose this becaus…
-
In the first document for the Taxonomy API and in some other documents (other Google Docs) related to taxonomy it seems that the taxonomy module **shall** support multiple classifications.
It would…
-
Since the GNITE project seems to be dead, there is a very basic prototype/proof of concept of a potential local hierarchical taxonomy editor running at TEST/fix/taxonomyTree.cfm.
The data model is …
-
I am trying to count the assignments at each level and use tax_glom to summarise the tax_table. But tax_glom() with rank_names[1] throws an error.
``` S
myData
```
```
phyloseq-class experiment-leve…
-
Are there any tutorial or examples to use this package? e.g., which command should be used under which conditions? what is the input and output? Thank you.
ghost updated
6 years ago