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I couldn't install Rmath.jl on a fresh Docker environment. I used the official Julia image of Docker and did nothing special.
Here are the steps for reproduction:
1. Install Docker (https://www.…
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Hi,
is a newick parser on the road map, or do you intend to rely on the R interface for now?
Thanks!
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I'm using julia 0.4, Bio.jl from master and ragel release 7.0.0.6 and colm 0.13.0.3, but ragel is not working properly. It outputs a large number of deprecation syntax warnings `WARNING: deprecated sy…
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When installing "Coverage" in a 32-bit Linux environment something strange happens:
```julia
julia> Pkg.add("Coverage")
INFO: Cloning cache of BinDeps from https://github.com/JuliaLang/BinDeps.jl.g…
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I am having difficulty with the HttpParser build when trying to install Whippet.
```
julia> dependencies.jl
INFO: Updating METADATA...
INFO: Updating IndexableBitVectors master...
INFO: Compu…
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Hi,
I've written a draft rcopy method that will let the user move DNA sequences in the "DNAbin" format in R, over to the julia session as a Vector{BioSequence{DNAAlphabet{4}}} - I just wanted to po…
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I made a minor contribution to IntervalTrees in PR 23: It added an outer constructor and convert method to make Intervals from Ranges like UnitRange{Int64}. This change seems fine, and all tests for I…
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After JuliaLang/julia#19449, soon to be merged for Julia 0.6, you will no longer be able to access the raw bytes of a string via `string.data`; instead, do `Vector{UInt8}(string)`.
This seems to af…
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How can I search for the given occurrence of a given kmer, say `dna"ACGT"`?
`search(dna"ACGTTTCGAACGT", dna"AGCT")` only yields the first match.
From the docs [here](https://biojulia.github.io/B…