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I'm trying to do a biplot in matplotlib and was wondering if there is a way to extract the loadings from the PCoA OrdinationResults object?
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draw a lasso
-get sample IDs, figure out of those have anything in common
-get sample IDs, redo pcoa with only those samples
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Hi!
I tried to install scikit but it doesnt work and I dont know why
I tried both conda install and pip install:
conda install -c conda-forge scikit-bio
Collecting package metadata (repodata.j…
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Assigning everyone, because I'm not sure who all has made these kinds of plots...
I have gene expression data from individual crabs across time and want to make a figure of relatedness.
Any ex…
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As highlighted in the current version of the manuscript:
![image](https://user-images.githubusercontent.com/38183826/74672136-8c62e800-51a4-11ea-940d-59c94d7421bb.png)
Two types of filtering out…
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Hi there,
I have been drawing some PCoA plots in phyloseq v 1.30.0 and can't get the legend for the 'color' variable to appear. The legend appears fine for the shape= "variable" (more info below). Do…
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Joey-
I've used plot_heatmap to plot the Top 20 most abundant pathways in my metagenomic data. However, the abundance scale is incomplete and only labeled at one location on the gradient. I'm not sur…
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Q2 2020.6
empress 0.2.0.dev0 pypi_0 pypi (installed July 31)
Download the Moving Pictures tutorial files:
```bash
wget https://docs.qiime2.org/2020.6/data/tuto…
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As I explain to other researchers the merits of DADA2, I am always at a loss as to what to call the final sequences from the DADA2 results. I usually just say "OTU", because it is easy to understand, …
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Hi Bernd and Arthur,
I understand this is a work in progress but in help("gl.read.silicodart") it says that the resulting object should be of class "genInd" but when I used this function my object …