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Hi David,
I'm using Orthofinder to analyze 19 species, and the mission is stuck. The supercomputer I rented has been running for a dozen days and still hasn't run 19 species. The commands I use are a…
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Hi Joe, I am trying to use the script to assign taxonomy to some 18S sequences. For this, I have generated my own blast database from a blast search of first 10 hits for each of my sequences and tax f…
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### Background and motivation
This is based on my own misunderstanding of `AsyncLocal`.
I was expecting `AsyncLocal` to be a single piece of state that is passed across all classes/methods opera…
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### What did you do?
I choose "File -> Export -> Database to SQL File ..." doesn't export the values in the "sqlite_sequence" table and in the Tables box appears the table named "sqlite_sequence":…
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The "default" mbox Database Format specified in [RFC 4155, Appendix A](https://www.rfc-editor.org/rfc/rfc4155.html#appendix-A) requires that
> the canonical mbox database MUST use a single Line-Fee…
ziqin updated
2 months ago
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`make_msa.sh`
```bash
# sequence databases
DB_UR30="$PIPE_DIR/uniclust/UniRef30_2021_06"
```
`DB_UR30="$PIPE_DIR/uniclust/UniRef30_2020_06"` seems to be correct. (ref. Download sequence datab…
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Hello,
I'm currently working on data preprocessing from multiple Illumina runs.
The first run was sequencend using a v2 kit, while the other runs used v3, which gives me different amplicon sizes (…
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Hello,
In your excellent paper, a key asspect used is the sequence identity between the artificial and any known natural sequences.
May I ask how this sequence identity is calculated in an effectiv…
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### Search first
- [X] I searched and no similar issues were found
### Description
In Postgresql database (I haven't tried in other databases), changesets containing valueSequenceNext generate diff…
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### Search first
- [X] I searched and no similar issues were found
### Description
Hi fellas,
I’m trying the cli command ‘generate-changelog’ for my database (dedicated SQL pool (formerly SQL DW…