baker-laboratory RoseTTAFold-All-Atom issues

baker-laboratory / RoseTTAFold-All-Atom

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Error: Failed to find 6kif_A in *_pdb.ffindex file

#154 rglee0103 opened 4 days ago
0
env creation file

#153 kartik-rallapalli closed 2 weeks ago
0
Error "Failed to find 6g5f_P in *_pdb.ffindex" while running covalent modification model

#152 imranjesar closed 2 weeks ago
0
Dev

#151 jscgh closed 3 weeks ago
0
Small Molecule Conformer Error

#150 thomas-tugwell closed 3 weeks ago
0
Rebase head with levitate bio

#149 JYlag closed 1 month ago
0
Fix arguments and paths for make_msa.sh

#148 alephreish opened 1 month ago
0
Failed to find "UniRef ID" in *_pdb.ffindex

#147 soic-oza closed 3 weeks ago
1
Change path to pdb100_2021Mar03

#146 zehanna opened 1 month ago
1
Connection timeout when downloading model weights

#145 brianjimenez opened 1 month ago
2
ValueError - name of the atom is not in list

#144 kirmedvedev opened 1 month ago
0
Generating D-amino acids and other NCAA alpha-amino acids through covalent modification for RoseTTAFold-All-Atom

#143 tsamdin opened 1 month ago
0
rfbind_tweaks

#142 wehs7661 closed 1 month ago
0
Evaluating Suitable Embeddings for Benchmarking Biological Foundation Models state or esm?

#141 shiyegao opened 2 months ago
0
LICENSE: pdb100_2021Mar03

#140 komatsuna-san opened 2 months ago
3
Dev

#139 jscgh closed 2 months ago
0
Is RNA MSA going to be implemented?

#138 TH-xForestx opened 3 months ago
0
.

#137 benf549 closed 3 months ago
1
protein ssDNA complex gives overlapped structure result

#136 fglaser opened 3 months ago
0
HHBlits takes ages to run!

#135 GM-33 opened 4 months ago
1
Avoid rerunning hhblits when several time same protein

#134 remybonnav opened 5 months ago
0
prolem psipred and blast legacy

#133 remybonnav closed 5 months ago
0
Error ' python -m rf2aa.run_inference --config-name protein'

#132 Dong-HoSeo opened 5 months ago
0
Is this an error?

#131 remybonnav closed 5 months ago
2
Log folder creation

#130 teemuronkko opened 5 months ago
0
CUDA Out of Memory Error

#129 Dong-HoSeo opened 5 months ago
3
Added residue replacement to handle protein chemical modifications and NCAAs

#128 gfzhou opened 5 months ago
0
Fix issue in complexes with RNA structures

#127 clami66 closed 5 months ago
1
ITSD-28112 add dockerfile and helper lsf script; also ignore some stuff

#126 melonistic closed 5 months ago
1
Run From Anywhere

#125 BrandonFrenz opened 5 months ago
4
Protein sequence truncated internally?

#124 amorehead opened 5 months ago
1
Update README.md

#123 aolgac closed 4 months ago
0
Have anybody succeed in replaceing the templates with custom protein complex templates?

#122 Qmi3 opened 5 months ago
0
The model is not perfect. Why was it published in Science?

#121 zymxiaozhu opened 5 months ago
0
Multiple models

#120 hnbabaei opened 5 months ago
0
installing RFAA using only PIP and avoiding conda and mamba

#119 Sinsilcobio opened 5 months ago
1
How can I reproduce bilin binder design?

#118 dohyeonscottkim closed 4 months ago
1
How to put metal ions into the complex?

#117 zymxiaozhu opened 6 months ago
1
unable to run example command

#116 Anupam-5 opened 6 months ago
0
dgl error?

#115 fglaser opened 6 months ago
2
running error

#114 fglaser closed 6 months ago
4
Issue about running the model

#113 yuqingucla closed 6 months ago
0
feat: new covalent bond input syntax

#112 YaoYinYing opened 6 months ago
0
small molecule conformer generation

#111 what-is-what closed 4 months ago
3
RFAA can't run any RNA models?

#110 jeramon opened 6 months ago
0
RFAA Fails To Run on DNA+RNA complexes.

#109 BrandonFrenz closed 6 months ago
1
The protein-small molecule complex is successfully generate yet no GPU is engaged along the process

#108 Sinsilcobio opened 6 months ago
4
Reproduction of the posebusters test set

#107 fuxuliu opened 6 months ago
1
A problem realted to t000_ss2.

#106 Luckken21 opened 6 months ago
4
Hardcode path to make_msa.sh means can only run from RFAA main directory

#105 jjv5 opened 6 months ago
3