baker-laboratory RoseTTAFold-All-Atom issues

baker-laboratory / RoseTTAFold-All-Atom

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Avoid rerunning hhblits when several time same protein

#134 remybonnav opened 1 week ago
0
prolem psipred and blast legacy

#133 remybonnav closed 1 week ago
0
Error ' python -m rf2aa.run_inference --config-name protein'

#132 Dong-HoSeo opened 1 week ago
0
Is this an error?

#131 remybonnav closed 1 week ago
1
Log folder creation

#130 teemuronkko opened 1 week ago
0
CUDA Out of Memory Error

#129 Dong-HoSeo opened 1 week ago
1
Added residue replacement to handle protein chemical modifications and NCAAs

#128 gfzhou opened 2 weeks ago
0
Fix issue in complexes with RNA structures

#127 clami66 closed 2 weeks ago
0
ITSD-28112 add dockerfile and helper lsf script; also ignore some stuff

#126 melonistic closed 2 weeks ago
1
Run From Anywhere

#125 BrandonFrenz opened 3 weeks ago
0
Protein sequence truncated internally?

#124 amorehead opened 3 weeks ago
1
Update README.md

#123 aolgac opened 3 weeks ago
0
Have anybody succeed in replaceing the templates with custom protein complex templates?

#122 Qmi3 opened 1 month ago
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The model is not perfect. Why was it published in Science?

#121 zymxiaozhu opened 1 month ago
0
Multiple models

#120 hnbabaei opened 1 month ago
0
installing RFAA using only PIP and avoiding conda and mamba

#119 Sinsilcobio opened 1 month ago
1
How can I reproduce bilin binder design?

#118 dohyeonscottkim closed 4 days ago
1
How to put metal ions into the complex?

#117 zymxiaozhu opened 1 month ago
0
unable to run example command

#116 Anupam-5 opened 1 month ago
0
dgl error?

#115 fglaser opened 1 month ago
1
running error

#114 fglaser closed 1 month ago
2
Issue about running the model

#113 yuqingucla closed 1 month ago
0
feat: new covalent bond input syntax

#112 YaoYinYing opened 1 month ago
0
small molecule conformer generation

#111 what-is-what opened 1 month ago
1
RFAA can't run any RNA models?

#110 jeramon opened 1 month ago
0
RFAA Fails To Run on DNA+RNA complexes.

#109 BrandonFrenz closed 1 month ago
1
The protein-small molecule complex is successfully generate yet no GPU is engaged along the process

#108 Sinsilcobio opened 1 month ago
3
Reproduction of the posebusters test set

#107 fuxuliu opened 1 month ago
1
A problem realted to t000_ss2.

#106 Luckken21 opened 1 month ago
4
Hardcode path to make_msa.sh means can only run from RFAA main directory

#105 jjv5 opened 1 month ago
1
Issues with Database Access and File Handling in RosettaFold All-Atom Pipeline

#104 Javaaaad opened 1 month ago
0
Small molecule conformer forcefield

#103 what-is-what closed 1 month ago
1
After tar, how is the size of bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz

#102 tcbtss opened 1 month ago
1
Covalently Modified Protein Notation

#101 jaydebertoch closed 1 month ago
0
Fixing error ERROR: could not open file '.../RoseTTAFold-All-Atom/uniclust/UniRef30_2021_06_cs219.ffdata'

#100 sbassi closed 2 months ago
0
Web-server results seem to be more precise compared to running the job locally

#99 Sinsilcobio opened 2 months ago
1
heterodimer config file

#98 velocirraptor23 opened 2 months ago
1
Add link to RFAA paper for convenience.

#97 AlexanderMath closed 2 months ago
0
The predicted protein-small molecule structure exhibits numerous clashes

#96 gky2023 opened 2 months ago
1
[issue] just following covalent modification tutorial

#95 kimdn opened 2 months ago
1
error while testing the examples

#94 Anupam-5 opened 2 months ago
1
The output PDB file contains errors in sulfur residues and HIS residues

#93 ygzn12138 opened 2 months ago
4
Error -- failed: Connection timed out when downloading

#92 Thomas8081 closed 2 months ago
4
rf2aa not found

#91 velocirraptor23 closed 2 months ago
3
Is There a way to disable MSA or Templates

#90 Jkerrison opened 2 months ago
0
Docker for RoseTTAFold-All-Atom?

#89 arvindsemwal20 opened 2 months ago
0
protein small molecule binding prediction algorithm

#88 simonkim1347 opened 2 months ago
2
Getting multiple designs

#87 jmProteins2024 opened 2 months ago
0
mmff94 force field fails for inorganic ligands

#86 jayunruh opened 2 months ago
1
Update make_msa.sh

#85 NiklasTR closed 2 months ago
0