baker-laboratory RoseTTAFold-All-Atom issues

baker-laboratory / RoseTTAFold-All-Atom

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rf2aa not found

#91 velocirraptor23 closed 5 months ago
3
Is There a way to disable MSA or Templates

#90 Jkerrison opened 5 months ago
0
Docker for RoseTTAFold-All-Atom?

#89 arvindsemwal20 opened 5 months ago
0
protein small molecule binding prediction algorithm

#88 simonkim1347 opened 5 months ago
2
Getting multiple designs

#87 jmProteins2024 opened 5 months ago
0
mmff94 force field fails for inorganic ligands

#86 jayunruh opened 5 months ago
1
Update make_msa.sh

#85 NiklasTR closed 5 months ago
0
Chilarity of Covalently Modified Proteins

#84 gilep opened 5 months ago
0
RoseTTAFold ValueError: No valid inputs were provided

#83 jmProteins2024 closed 5 months ago
1
Question about xyz_prev

#82 constantin-schneider opened 5 months ago
0
Why is the predicted DNA disconnected?

#81 ygzn12138 opened 5 months ago
0
Can protein_sm job use pdb as protein input?

#80 sevengo8378 opened 5 months ago
0
Out of Memory error when using RFAA

#79 AaranWang opened 5 months ago
1
rf2aa as a Python module

#78 YaoYinYing closed 4 months ago
0
errors ocurred when perfoming the installation step of "conda env create -f environment.yaml "

#77 wangyang0727 opened 5 months ago
1
Could not correct 1 stereocenter(s) in this molecule (ARD)

#76 XuanZhou001 opened 5 months ago
0
ValueError: No valid inputs were provided

#75 merryxiang opened 5 months ago
2
Activate RFAA

#74 jmProteins2024 opened 5 months ago
5
bugs in merge_inputs.py. a3m_out["msa"] error same with issue 12 and 35

#73 YangyangMiao opened 5 months ago
0
psipred buffer overflow detected

#72 cdienem opened 5 months ago
3
pdb100_2021Mar03.tar.gz download problem

#71 iungyu-snu opened 5 months ago
2
pae_inter is NaN

#70 Leo-T-Zang closed 4 months ago
6
Multiple PDB structures prediction for protein-protein complex

#69 mtahe opened 6 months ago
1
Solving Environment failed

#68 EulusMaximus opened 6 months ago
4
Problems with the model output results

#67 mh8859 opened 6 months ago
0
Uniref Mirror

#66 smilenaderi opened 6 months ago
2
How can I specify Output files path?

#65 Leo-T-Zang closed 6 months ago
1
The error occurs when I use molecules outside of the examples to predict covalent complexes.

#64 zyrlia1018 opened 6 months ago
4
CUDA Out of Memory Error Predicting Protein with 1200 Amino Acids

#63 RichenLee opened 6 months ago
5
Failed to find 6azb_A in *_pdb.ffindex

#62 BigMary2001 opened 6 months ago
2
Segmentation Fault ; FileNotFoundError: [Errno 2] No such file or directory: '7qxr/A/t000.atab'

#60 darylrbarth opened 6 months ago
3
Stuck at "Running hhsearch"

#59 denizkavi closed 4 months ago
1
No module named 'hydra'

#58 cron-weasley opened 6 months ago
4
Error with Protein/Nucleic acid complex prediction: "Class values must be smaller than num_classes"

#57 ebettler opened 6 months ago
11
"sequence ss_pred contains no residues" Error

#56 denizkavi closed 6 months ago
1
bad prediction for a homodimer

#55 lucl13 opened 6 months ago
4
Output PDB file formatting potentially invalid for proper ligand parsing

#54 amorehead opened 6 months ago
3
For protein_sm, can we have the option for RFAA to use a template protein pdb as input

#53 cyangNYU opened 6 months ago
2
How can the results of inference be visualized?

#52 MedicalAGI closed 6 months ago
0
remove build strings from env to make it more portable and add UI

#51 duerrsimon opened 6 months ago
3
Are there any methods to relax the small molecule and protein complex?

#50 simonkim1347 closed 6 months ago
2
Fix some bugs in data handling code

#49 jnooree closed 6 months ago
0
Size limitations based on memory allocation

#48 gulseva opened 6 months ago
2
Minor bug affecting expanding multi-MSAs

#47 milafternoon closed 6 months ago
3
Failed to generate 3D coordinates for small molecule

#46 Amy-Fernandez opened 6 months ago
1
How to produce the top 5 proteins/complexes?

#45 syanle opened 6 months ago
0
SignalP required?

#44 CMargreitter closed 6 months ago
2
API for unnatural amino acid

#43 LesongWei opened 6 months ago
1
Small fasta sequences cause error

#42 tydingcw opened 6 months ago
2
Small molecule without protein causes error

#41 tydingcw opened 6 months ago
1

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