baker-laboratory RoseTTAFold-All-Atom issues

baker-laboratory / RoseTTAFold-All-Atom

Other

649 stars 119 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Issues with Database Access and File Handling in RosettaFold All-Atom Pipeline

#104 Javaaaad opened 6 months ago
0
Small molecule conformer forcefield

#103 what-is-what closed 6 months ago
1
After tar, how is the size of bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt.tar.gz

#102 tcbtss opened 6 months ago
1
Covalently Modified Protein Notation

#101 jaydebertoch closed 6 months ago
0
Fixing error ERROR: could not open file '.../RoseTTAFold-All-Atom/uniclust/UniRef30_2021_06_cs219.ffdata'

#100 sbassi closed 6 months ago
0
Web-server results seem to be more precise compared to running the job locally

#99 Sinsilcobio opened 6 months ago
1
heterodimer config file

#98 velocirraptor23 opened 6 months ago
1
Add link to RFAA paper for convenience.

#97 AlexanderMath closed 6 months ago
0
The predicted protein-small molecule structure exhibits numerous clashes

#96 gky2023 opened 7 months ago
1
[issue] just following covalent modification tutorial

#95 kimdn opened 7 months ago
1
error while testing the examples

#94 Anupam-5 opened 7 months ago
1
The output PDB file contains errors in sulfur residues and HIS residues

#93 ygzn12138 opened 7 months ago
4
Error -- failed: Connection timed out when downloading

#92 Thomas8081 closed 6 months ago
4
rf2aa not found

#91 velocirraptor23 closed 6 months ago
3
Is There a way to disable MSA or Templates

#90 Jkerrison opened 7 months ago
0
Docker for RoseTTAFold-All-Atom?

#89 arvindsemwal20 opened 7 months ago
0
protein small molecule binding prediction algorithm

#88 simonkim1347 opened 7 months ago
2
Getting multiple designs

#87 jmProteins2024 opened 7 months ago
0
mmff94 force field fails for inorganic ligands

#86 jayunruh opened 7 months ago
1
Update make_msa.sh

#85 NiklasTR closed 7 months ago
0
Chilarity of Covalently Modified Proteins

#84 gilep opened 7 months ago
0
RoseTTAFold ValueError: No valid inputs were provided

#83 jmProteins2024 closed 6 months ago
1
Question about xyz_prev

#82 constantin-schneider opened 7 months ago
0
Why is the predicted DNA disconnected?

#81 ygzn12138 opened 7 months ago
0
Can protein_sm job use pdb as protein input?

#80 sevengo8378 opened 7 months ago
0
Out of Memory error when using RFAA

#79 AaranWang opened 7 months ago
1
rf2aa as a Python module

#78 YaoYinYing closed 6 months ago
0
errors ocurred when perfoming the installation step of "conda env create -f environment.yaml "

#77 wangyang0727 opened 7 months ago
1
Could not correct 1 stereocenter(s) in this molecule (ARD)

#76 XuanZhou001 opened 7 months ago
0
ValueError: No valid inputs were provided

#75 merryxiang opened 7 months ago
2
Activate RFAA

#74 jmProteins2024 opened 7 months ago
5
bugs in merge_inputs.py. a3m_out["msa"] error same with issue 12 and 35

#73 YangyangMiao opened 7 months ago
0
psipred buffer overflow detected

#72 cdienem opened 7 months ago
3
pdb100_2021Mar03.tar.gz download problem

#71 iungyu-snu opened 7 months ago
2
pae_inter is NaN

#70 Leo-T-Zang closed 6 months ago
6
Multiple PDB structures prediction for protein-protein complex

#69 mtahe opened 7 months ago
1
Solving Environment failed

#68 EulusMaximus opened 7 months ago
5
Problems with the model output results

#67 mh8859 opened 7 months ago
0
Uniref Mirror

#66 smilenaderi opened 7 months ago
2
How can I specify Output files path?

#65 Leo-T-Zang closed 7 months ago
1
The error occurs when I use molecules outside of the examples to predict covalent complexes.

#64 zyrlia1018 opened 8 months ago
5
CUDA Out of Memory Error Predicting Protein with 1200 Amino Acids

#63 RichenLee opened 8 months ago
5
Failed to find 6azb_A in *_pdb.ffindex

#62 BigMary2001 opened 8 months ago
5
Segmentation Fault ; FileNotFoundError: [Errno 2] No such file or directory: '7qxr/A/t000.atab'

#60 darylrbarth opened 8 months ago
4
Stuck at "Running hhsearch"

#59 denizkavi closed 6 months ago
1
No module named 'hydra'

#58 cron-weasley opened 8 months ago
4
Error with Protein/Nucleic acid complex prediction: "Class values must be smaller than num_classes"

#57 ebettler opened 8 months ago
11
"sequence ss_pred contains no residues" Error

#56 denizkavi closed 7 months ago
1
bad prediction for a homodimer

#55 lucl13 opened 8 months ago
4
Output PDB file formatting potentially invalid for proper ligand parsing

#54 amorehead opened 8 months ago
3

Previous Next