baker-laboratory RoseTTAFold-All-Atom issues

baker-laboratory / RoseTTAFold-All-Atom

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For protein_sm, can we have the option for RFAA to use a template protein pdb as input

#53 cyangNYU opened 8 months ago
2
How can the results of inference be visualized?

#52 MedicalAGI closed 8 months ago
0
remove build strings from env to make it more portable and add UI

#51 duerrsimon opened 8 months ago
3
Are there any methods to relax the small molecule and protein complex?

#50 simonkim1347 closed 7 months ago
2
Fix some bugs in data handling code

#49 jnooree closed 8 months ago
0
Size limitations based on memory allocation

#48 gulseva opened 8 months ago
2
Minor bug affecting expanding multi-MSAs

#47 milafternoon closed 8 months ago
3
Failed to generate 3D coordinates for small molecule

#46 Amy-Fernandez opened 8 months ago
2
How to produce the top 5 proteins/complexes?

#45 syanle opened 8 months ago
0
SignalP required?

#44 CMargreitter closed 8 months ago
2
API for unnatural amino acid

#43 LesongWei opened 8 months ago
1
Small fasta sequences cause error

#42 tydingcw opened 8 months ago
2
Small molecule without protein causes error

#41 tydingcw opened 8 months ago
1
More than one bond in the covale_inputs section

#40 pstansfeld opened 8 months ago
3
Custom Template Database

#39 fabgonzal opened 8 months ago
0
OSError after python -m rf2aa.run_inference --config-name protein

#38 PiotrP95 opened 8 months ago
1
The code stops at the protein example.

#37 YOtani11517 opened 8 months ago
5
Error in python -m rf2aa.run_inference --config-name protein_sm

#36 xie-yun-ai opened 8 months ago
3
Error in homodimer prediction

#35 Garhorne0813 closed 8 months ago
2
Error in the protein example

#34 xie-yun-ai opened 8 months ago
6
Follow the steps to install RFAA, but an error occurs when trying to test 7u7w_protein

#33 knight-qs opened 8 months ago
39
Error in the protein example

#32 ILUT1 opened 8 months ago
4
BLAST (SS assignment) pipeline fails for certain inputs

#31 amorehead opened 8 months ago
7
`expand_multi_msa()` fails for certain inputs

#30 amorehead closed 8 months ago
1
added license

#29 r-krishna closed 8 months ago
0
psipred terminated

#28 leodoned closed 8 months ago
3
Excellent work + small question -- smiles format

#27 Samuel-gwb closed 8 months ago
2
adding support for multi-GPU inference

#26 Garhorne0813 opened 8 months ago
4
Is it possible to use the RF2AA in the colab note?

#25 g00dtw0 opened 8 months ago
4
Please forgive me as a beginner.why did I follow the steps but end up with this mistake? Thank you very much

#24 xie-yun-ai opened 8 months ago
2
terminated when run in conda environment

#23 masterwhook opened 8 months ago
3
CUDA out of memory while running the 'nucleic_acid' example

#22 wjk1214 closed 8 months ago
2
Error with many .sdf files - Failed to generate 3D coordinates for molecule

#21 jmrussell opened 8 months ago
19
Installation issues

#20 XuanZhou001 opened 8 months ago
5
Is it possible to share your training data to the public?

#19 lkfo415579 opened 8 months ago
0
Questions about the database

#18 mh8859 opened 8 months ago
5
Error while running the protein example

#17 abhinavb22 opened 8 months ago
11
added back sm complex example

#16 r-krishna closed 8 months ago
0
Add minimum and recommended hardware requirements to readme.md

#15 jorgecomas opened 8 months ago
5
Training code availability?

#14 amorehead opened 8 months ago
0
Switch to `mamba` for dependency management, and document other required installation details

#13 amorehead closed 8 months ago
0
Bug in merge_inputs.py

#12 CYP152N1 closed 8 months ago
5
Update merge_inputs.py

#11 CYP152N1 closed 8 months ago
3
bugs (?) in make_msa.sh

#10 komatsuna-san opened 8 months ago
4
Fix `hhdb` value in base.yaml

#9 amorehead closed 8 months ago
0
run error about apptainer

#8 Takk522 opened 8 months ago
6
make_msa.sh error (signalp6, hhblits, hhfilter)

#7 blacktanktop closed 8 months ago
9
Using pre-calculated msa

#6 gezmi opened 8 months ago
3
About Conda Environment

#5 Maikuraky opened 8 months ago
22
No such file or directory: 'pdb100_2022Apr19/pdb100_2022Apr19_pdb.ffindex'

#4 blauemond closed 8 months ago
4

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