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Hi there, thanks for your nice work, it helps me a lot!
I have a small question. I see this crop logic:
https://github.com/MIC-DKFZ/nnUNet/blob/96d44c2fc1ce5e18da4cd54bf52882047c37982e/nnunet/pr…
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In the following code fragment:
1) if I do not use "setVolume", no matter in which order the two "addVolume" are done, I only see the binary "seg" image.
2) if I uncomment "setVolume" then I ge…
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For multi-label segmentation, it has been said (https://github.com/Project-MONAI/MONAI/issues/415#issuecomment-632952055) that `out_channels `should be a number of labels+1 (Background). But in [Tuto…
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Hi again.
I also tested the multi gpu train.py form and worked fine till now in training,
however I need to use trained model for testing on new samples.
did you checked test.py file?
Error shown …
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Hi, thanks for your excellent work!
I want to re-implement this model, will you provide your trained models whose results achieve SOTA from your paper? Thus we can only use your model doing inferen…
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Hi,
Thank you for your excellent work. Recentlly, we downloaded the Task082_BraTS2020 pretrained model, when we run nnUNet_determine_postprocessing, it shows the following information:
Display the…
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Hi Fabian
I have a question about when I use nnUnet.
There are more than 1000 3d Nifti data in my dataset, but the help document shows that IDs cannot exceed 999. Is there any way to use all data?
…
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Hi dear Askerlee,
first of all, greetin for your valuable code,
please explain how I can test this code over brats 2020 dataset,
as I replace that dataset in the brats path also setting the paramet…
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I trained the nnunet models with "nnUNetTrainerV2BraTSRegions_DA3_BN__nnUNetPlansv2.1", which was the latest model for training Brats-2020 datasets, segmentation task. I found a strange phenomenon tha…
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Thanks for your inspired work, and I would like to know how to prepare the data, such as BraST datasets.
When I download the BraST dataset, it includes 3 folds: ImageTr, Label, ImageTs. All files a…