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Doxygen warnings after doxygen update cause [CI failure](https://travis-ci.com/ICB-DCM/AMICI/jobs/223966274):
```
DOXYGEN failed:
/Users/travis/build/ICB-DCM/AMICI/src/amici.cpp:89: warning: do…
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Try using [lambdify](http://www.sympy.org/scipy-2017-codegen-tutorial/notebooks/22-lambdify.html) to convert a system of equations to a Python function and solve with scipy's ODE solvers.
- [x] dV/…
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**Describe the bug**
I was running simulations on the LG M50 and I noticed a strange behaviour related to the termination events (strange behaviour for this case described below as it might not be th…
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Dear Dr Zhang,
I posted an issue last month, but I couldn't find it now, so I am opening a new issue.
Currently I am working on an open source project OpenDesignWWTP which targets for wastewater tre…
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A much requested feature here at DTU Biosustain. Any particular preference if this should be part of cobrapy or a separate package? I am leaning more towards the first.
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Hi,
this small example
```
from pyomo.environ import (ConcreteModel, Constraint,
Objective, Param,
Var, minimize, SolverFactory)
from py…
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Summary:
DAE solver with forward sensitivity analysis.
Description:
Differential Algebraic Equations(DAE) are more general than ODE, but also more challenging to solve. In application It usua…
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**Describe the bug**
All tests fail when scikits not installed, e.g.
```
======================================================================
ERROR: test_discretisations.test_discretisation (uni…
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I appear to have installed `scikit-odes` successfully
```
bash-3.2$ CC=gcc-9 pip3 install scikits.odes
CC=gcc-9 pip3 install scikits.odes
Collecting scikits.odes
Using cached https://files.py…
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I believe I have built sundials with lapack:
```
cmake -DLAPACK_ENABLE=ON -DSUNDIALS_INDEX_TYPE=int32_t -DCMAKE_INSTALL_PREFIX=/Users/dominic.steinitz/MySundials/instdir -DEXAMPLES_INSTALL_PATH=/U…