-
Hi @dlfivefifty
Firstly, thanks for ApproxFun. :) !!
I wanted to translate a Burger's equation solver from chebfun to ApproxFun. Could you point me to the equivalent of `spinop` in ApproxFun, …
-
Dear Developers, I'm counting multiple different peptides binding to a receptor and analyzing the differences in the contacts they make. Firstly, I used cpptraj to calculate a nativecontacts as a refe…
-
I am currently working on an Ising Model simulation using JAX and thought it might be nice to optionally disable negative indices in the `.at[...]` methods of arrays.
Currently the `mode` parameter…
-
Hi,
I train a mace model using the periodic and nonperiodic structures together in the training set. When I use the trained model to perform the md simulations, it can run normally under the nonpe…
-
In most cases, it would suffice to only look at what happens in one spatial dimension (x) along the optical axis (z).
This would greatly speed up calculations and reduce the amount of memory used.
…
-
I'm trying to define a plane source such that it outputs a plane wave, but I'm getting some odd-looking outputs. The following code seems to produce some pretty heavy fringes of some sort. Any thought…
-
@zhazorken and I were trying to set up a toy model where the direction where gravity is acting is periodic and there's some sort of buoyancy source in the domain, leading eventually to a plume that's …
-
Hello,
I was reading the Symbolic-Sums-and-Indices section of the docs, but I could not find there whether I can define a model on a lattice with periodic boundary conditions.
For example, for a s…
-
I'm trying to set up a small test where a zonal velocity forced by open boundary conditions goes around an immersed sea mount, using the new immersed pressure solver.
Unfortunately I get immediate …
-
Hi Max,
I am working with a diffusion-only model (`model._put([0,0,0,1],model.proclist.co)`) in 3D hematite crystal structure.
1) How to define lattice angles in lattice configuration to implement …