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Hi Alex,
I am trying to analyze allele-specific single cell RNAseq data collected through 10x chromium v2 and I was wondering if Wasp allele specific calling would work in the context of STAR solo.…
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A Beacon is a web service for genetic data sharing that can be queried for information about specific alleles.
https://docs.genomebeacons.org/
For v1 (not sure about current) the only downside is th…
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Hi,
I tested using version 113 of VEP. Small VCF files work fine, but when I provide a larger VCF file with about 100,000 lines, the program is interrupted, showing numerous warnings: WARNING: “Trans…
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Using the reads functionality it should be possible to provide the allele pileup for a specific position in the genome.
Looking at the distribution of alleles at a single genomic position is useful f…
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I have a large scale dataset of WXS .g.vcfs , I do not have the original FASTA files. I would like to genotype these .g.vcfs into vcfs. These vcfs will be used in downstream applications. The issue is…
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I would like some confirmation on the definition of SVLEN when used with different representations of specific variants. I used Tandem Repeats as an example but that could be applicable to others.
…
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Add an option to filter by genomic position or specific variants instead of gene names. This will enhance the flexibility of the script, allowing users to target specific regions or variants more prec…
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**Transferred from:** [NIF-11599](https://support.crbs.ucsd.edu/browse/NIF-11599)
**Original Reporter:** Nicole Washington
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We need a section of GENO that records the properties of an "allele" on…
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I noticed that the py-ard implementation for converting v2 to v3 typings is not yet complete:
https://github.com/nmdp-bioinformatics/py-ard/blob/d43a035361cc90cef9bf0c98475ec90396b06a4f/pyard/db.py…
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The field should contain the following information
embryo production (mating, superovulation & mating, IVF)
Email from LN: March 3, 2021 at 2:05 PM
Hi All,
I thought we had agreed to capture the v…