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Hi, I encounter python ValueError when running the program with flag --ont but it works well without --ont.
The version I am using is v0.5.6-0-gbd7923a-dirty (installed via conda, Python 2.7.15)
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I work for MDU, in Victoria Australia, with @tseemann and I'm trying to use mykrobe predictor to find amr in TB isolates. I had some issues in installation, and so decided to follow your instructions …
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When I ran `mykrobe predict` on a TB sample, it quickly failed with this error:
```
[27 Jun 2016 22:52:08-PaP][file_util.c:169] Fatal Error: Cannot write to file: /usr/local/easybuild/software/mykrob…
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Hello,
I am getting the error message: IndexError: list index out of range when I try to run mykrobe predict on our linux environment. When I run it on my Mac Book Pro it works fine. …
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I installed mykrobe and when I try to do AMR predict, I am facing some problem.
ubuntu@vsrinivasan:~/mtb_genome$ mykrobe predict SRR648517 tb -1 SRR648517.fastq.gz
INFO:root:Running AMR predictio…
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possibly related to #126 : I installed Mykrobe on linux using pip, and mccortex separately using clone and make. mccortex runs when tested alone, and is in PATH.
Running mykrobe, however, returns an…
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Was getting the following stacktrace when running the latest version of mykrobe on bioconda. (0.5.6)
Example command : mykrobe predict tb_sample tb -1 ERR117639_1.fastq.gz
`Traceback (most recen…
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mykrobe predict ERR117639 ./ERR117639*.gz tb
Error :
mykrobe predict: error: argument species: invalid choice: 'demo_input_file_for_M.tuberculosis_app.fastq' (choose from 'staph', 'tb')
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I installed mykrobe on my PC which works and runs fine, but now when I installed it on the server I get this error when I try to run an analysis:
```sys.stdout.write(nextline) …
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./ios.sh --disable-armv7 --disable-armv7s --disable-arm64e --disable-i386 --enable-gpl --enable-x264 --enable-x265 --full
Building mobile-ffmpeg static library for IOS
Architectures: arm64, x86-64…