iqbal-lab Mykrobe-predictor issues

iqbal-lab / Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop

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Index error on version 0.6.1

#154 cytang19 closed 5 years ago
3
Resistance prediction for mixed isolates

#153 AdmiralenOla closed 5 years ago
3
Update README to point to new repo

#152 Phelimb closed 5 years ago
1
--ont flag gives error message

#151 cytang19 closed 5 years ago
1
Coll et al lineage/sub-lineage from Mykrobe

#150 flashton2003 closed 5 years ago
2
updated readme with information zam gave to me

#149 flashton2003 closed 5 years ago
3
Type Error : Write()

#148 idolawoye closed 5 years ago
4
Failing to run Phelim/mykrobe_predictor

#147 kristyhoran closed 5 years ago
4
Inconsistency between Myrkrobe results and assembly

#146 sachalau opened 6 years ago
8
mykrobe --version on linux shows mykrobe v0.5.6-0-gbd7923a-dirty . Is this version OK to use?

#145 harrismia closed 6 years ago
3
Question about resistance report. R vs r

#144 harrismia closed 6 years ago
2
confidence_threshold bug

#143 Takadonet closed 5 years ago
2
PyPi releases do not include the license file

#142 mbargull opened 6 years ago
0
Request: save the .json file for later use

#141 RaSieb closed 6 years ago
4
Error with install on linux / python 3.6

#140 RaSieb closed 5 years ago
2
__init__() got an unexpected keyword argument 'include_hom_alt_calls'

#139 daarojasos closed 5 years ago
1
Add model to output

#138 Phelimb closed 5 years ago
0
Remove win installer and inno setup

#137 ffranr closed 7 years ago
0
log messages explicitly sent to stdout

#136 ffranr closed 7 years ago
0
added instructions and config files for building win64 installer

#135 ffranr closed 7 years ago
0
Can we get summary for the result

#134 yujun2017 closed 5 years ago
2
Fix UI build

#133 simonheys closed 7 years ago
0
need a option for the output file

#132 yujun2017 closed 7 years ago
3
[iqbal-lab/Mykrobe-predictor] IndexError: list index out of range exception on Linux but not Mac (#126)

#131 ponomarevsy closed 7 years ago
1
"mccortex geno" invalid command

#130 RaSieb closed 5 years ago
4
make compare.py python3 compatible

#129 antunderwood closed 7 years ago
0
mccortex to latest

#128 Phelimb closed 7 years ago
0
Added missing species panel to dist

#127 Phelimb closed 7 years ago
0
IndexError: list index out of range exception on Linux but not Mac

#126 harrismia closed 5 years ago
9
mykrobe predictor error

#125 vsrinivasanoucru closed 5 years ago
2
Removed tomidae + ratisbonense from TB species probe set

#124 Phelimb closed 7 years ago
0
Format of Variants Column

#123 Owen-haha opened 7 years ago
3
mykrobe predict: error: argument species:

#122 hirenbioinfo closed 5 years ago
3
Develop

#121 Phelimb closed 7 years ago
0
mykrobe errors with: AttributeError: 'Namespace' object has no attribute 'ont'

#120 antunderwood closed 5 years ago
2
Probeset Documentation

#119 RaSieb opened 7 years ago
9
Failing to call high freq R allele, saying log lik R== log lik r

#118 iqbal-lab closed 5 years ago
2
Ont issue 116

#117 Phelimb closed 7 years ago
1
Stop printing r calls for nanopore data

#116 iqbal-lab closed 7 years ago
0
Remove requirement of seeing 100% of an allele for nanopore data

#115 iqbal-lab closed 5 years ago
1
fix for atlas requirement clash (reported by several users)

#114 Phelimb closed 7 years ago
0
Json_to_tsv script in Docker

#113 dankein closed 5 years ago
1
Using population genome graphs for genotyping

#112 ytliuSVN opened 8 years ago
2
Ensuring probes do not extend too far

#111 iqbal-lab closed 5 years ago
1
Probe generation and paralogs

#110 iqbal-lab closed 5 years ago
1
Update documentation and error handling for default skeleton writing

#109 rrwick closed 5 years ago
3
Mixtures results are ambiguous without prior knowledge of subspecies

#108 Phelimb closed 5 years ago
1
llatzerense species has a bug in reporting u'percent_coverage

#107 Phelimb closed 5 years ago
0
paired-end reads

#106 afkoeppel closed 8 years ago
1
new release integrating python code into exe for app

#105 iqbal-lab closed 5 years ago
1