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Hi Everyone,
We have updated Cromwell from version 51 to 82 recently, and changed the following line in Dockerfile:
-----------------------------------------------------------------------
FROM br…
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While testing cromwell-36 with AWS batch I was able to reproduce this error:
```
2019-02-25 09:38:52,508 cromwell-system-akka.dispatchers.engine-dispatcher-24 ERROR - WorkflowManagerActor Workflow…
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# 🚀 Feature Request
Hi, I've been using Hydra for 6 mos or so, so this is more of a question than a feature request, since I don't know for sure that this isn't already supported.
I'd like to modi…
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**Description**
Nextflow has options to generate timeline reports and dags on the completion of a workflow. They are default written to the directory the engine is running. I couldn't find a sim…
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Following manual review on 2021-11-03, the following files are missing either thumbnail or story.
## Vanderbilt HE missing both thumbnail and story
- [ ] Generated
- [ ] In assets bucket
- [ ] …
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## Bug report
If one runs `nextflow run` with `-with-report` or `-with-trace` (and provides a "main" nextflow workflow file as input, such as `main.nf`), then one gets the error:
```
No projec…
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## New feature
AWS Batch, by default, will attempt to schedule multiple tasks on the same VM. This is great from a cost/time perspective but can have some unwanted side effects.
We consistently…
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## Bug report
### Expected behavior and actual behavior
When I set then `env` config scope for the `PATH` variable, its value is passed properly when I use "local" executor (with and without do…
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Hi!
I'm having some trouble request s3 objects that are outside my current region (I get a Status Code: 301).
Backend: AWS Batch
Filesystem: S3
Region : `ap-southeast-2`
I'm attempting to …
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Hello,
I am running CalliNGS workflow using AWS BATCH on AWS Sagemaker using AWS s3 storage drives. I am using the following containerOverides:
```
containerOverrides={
'command': [
…