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```
/Users/ian.fiddes/vg/deps/libvgio/include/vg/io/blocked_gzip_input_stream.hpp:6:25: fatal error: htslib/bgzf.h: No such file or directory
#include
^
compilation term…
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I'm forwarding Debian bug 865012 (https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865012), which mentions failing tests on i386. I can reproduce these on a plain Debian stretch i386 install with the…
satta updated
5 years ago
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We have observed that shards of varcan work are sporadically failing and not being caught by Cromwell.
This manifests as statements like this in the Varscan stderr:
```
[E::bgzf_read_block] Fail…
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SAMtools implements `bgzf_useek` that apparently allows seeking bgzf files using offset in uncompressed data. https://github.com/samtools/htslib/blob/84a89da6cf0eb828d39f9a85b82411d58c840e16/htslib/bg…
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Hi,
I am trying to run RNAplonc in a transcriptome assembly. I have completed till the cd-hit-est result step.
But now I am facing difficulty in running txCdsPredict command. I have been trying to i…
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The error log file as:
[E::bgzf_uncompress] inflate failed: invalid distance too far back
[E::bgzf_read_block] inflate_block error -1
Number of samples in line and header disagrees at chr2:13176554…
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```
typing make to compile on my system (Ubuntu desktop 64 bit, 11.10) is giving
the following output with Error 1 and Error2
Upon giving command "make", I expect to compile the BSMAP. However, the …
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Hello,
I am trying to run Expansion Hunter on whole genome sequencing data. The data is in the form of CRAM files. I am running into the following issue when I try to run the code on JupyterLab:
…
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Please double-check the constants in https://github.com/pezmaster31/bamtools/blob/master/src/api/BamConstants.h
// zlib & BGZF constants
const char GZIP_ID1 = 31;
const char GZIP_ID2 = 139;
const…
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- WhatsHap and Python version (`python -V` and `whatshap --version`)
- `whatshap`: 2.3
- `python`: 3.10.14
- How you installed the tool (conda, pip)
- conda
- Which command-line parameters…