Illumina hap.py issues - Githubissues

Illumina / hap.py

Haplotype VCF comparison tools

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Can't find reference

#188 ktruve opened 1 month ago
0
How is the false positive rate calculated in som.py stats?

#187 Krannich479 opened 2 months ago
0
Docker build failed

#186 MAlwaz opened 2 months ago
0
[E::bgzf_uncompress] inflate failed: invalid distance too far back

#185 liukeweiaway opened 6 months ago
1
Update README.md to fix typo

#184 CNuge opened 7 months ago
0
Update Dockerfile

#183 omixer opened 7 months ago
0
Link provide in email is broken

#182 Manuel-DominguezCBG closed 9 months ago
1
Incorrect number of FORMAT/AD values on scmp-distance engine

#181 jerrywongzy opened 10 months ago
0
Docker fails to build for both bases

#180 rickymagner opened 10 months ago
0
ROC and PR curve

#179 ESDeutekom opened 10 months ago
2
Docker Implementation: Several Error Messages Related to "preprocess"

#178 cwarden45 closed 11 months ago
1
error code 1

#177 NRusca closed 1 year ago
0
Trying to print sequence when we mean contig name

#176 adamnovak opened 1 year ago
0
VCF format issues with --write-vcf, - FORMAT field inconsistencies

#175 insilicool opened 1 year ago
1
missing reference

#174 Overcraft90 closed 1 year ago
1
Integrating vcfdist as a comparison engine into hap.py

#173 TimD1 opened 1 year ago
0
Error running BCFTOOLS :Argument list too long

#172 zhaolx01 opened 1 year ago
0
CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed

#171 oranges7 closed 1 year ago
0
Parsing results VCF gives different counts of TRUTH FN than summary

#170 BrianLohman opened 1 year ago
1
pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)

#169 robertzeibich opened 1 year ago
0
Confused with the interpretation when having TRUTH.FN and QUERY.FP

#168 Manuel-DominguezCBG opened 1 year ago
2
WES TI TV ratio

#167 solivehong closed 8 months ago
2
running into build error with CMake

#166 Overcraft90 opened 1 year ago
3
TRUTH.TOTAL differs despite having used the same TRUTH SET

#165 robertzeibich opened 1 year ago
2
Hap.py not working with singularity

#164 NoamYakar23 opened 1 year ago
1
PreProcessing creates un-ordered VCF

#163 MattWellie opened 1 year ago
1
output_vcf

#162 Shreya-droid opened 1 year ago
1
Don't find the reference

#161 kangxiongbin opened 1 year ago
1
Failed to open or file not indexed:

#158 colinhercus opened 2 years ago
0
Calculation of METRIC.Precision

#157 b-math opened 2 years ago
1
--version option not working on pre.py and hap.py

#156 nvnieuwk opened 2 years ago
0
Ubuntu 20 compatible or Python 3 Version

#155 tahirasma opened 2 years ago
1
segmentation fault at gvcf2bed

#154 meredith705 opened 2 years ago
7
how can i get filtered position?

#153 ruizgo opened 2 years ago
1
Fix minor typo

#152 urmi-21 opened 2 years ago
0
python 2.x Sunset, potential 3.x port?

#151 OsborneACollin opened 2 years ago
8
Update rtgtools to v3.12.1

#150 sunnycxh closed 2 years ago
0
getting traceback while using '$python bin/hap.py'

#149 monika7697 opened 2 years ago
0
Get something error in running the example.

#148 MartinChiaHsinLiu opened 2 years ago
0
Usage with different VCF callers

#147 stanleyrc opened 2 years ago
1
FP in phased variant overlapping non-phased variant

#146 arangrhie opened 3 years ago
3
Getting Error on Docker-compose

#145 puneetgaurrr opened 3 years ago
0
How vary AF and DP for PR ROC?

#144 KewinOgink opened 3 years ago
0
VCF Comparison with same file does not yield perfect result

#143 itsroops opened 3 years ago
6
--write-counts/--no-write-counts simplify

#142 leipzig closed 3 years ago
0
Code Broken : Hap.py showing error on vcf files

#141 aditya-sarkar441 opened 3 years ago
0
The command given in introduction not working

#140 aditya-sarkar441 closed 2 years ago
3
hap.py version on dockerhub outdated

#139 valleema opened 3 years ago
0
Error: "Fasta file /opt/hap.py-data/hg19.fa is not indexed"

#138 valentyn-dev closed 3 years ago
2
Bioconda Package Install Bug

#137 jkalleberg opened 3 years ago
3