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Running the RPN pipeline inside the docker container will throw the following exception:
" OSError: No command "c3d_affine_tool" found on host [...]."
For the command to run, Convert3D needs to …
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'No command "dot" found on host'
We need to install graphviz
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rpn-signature.py seems to run on the v0.2 docker but runs oin this error:
![image](https://user-images.githubusercontent.com/21124251/208430002-c13674b5-9160-40c1-9bac-423f24a7bc9a.png)
Plus: at l…
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As mentioned in #19 I have issue with one test with pytest `pytest -vs tests/test_babs_init.py::test_babs_init[toybidsapp-BIDS-single-ses-True-False]`:
```
install(error): /private/var/folders/vs/…
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Dear maintainer,
I am trying to use the connectome mapper 3 on a cluster, and I tried to pull the image using the command on the CMP website:
singularity pull library://connectomicslab/default/c…
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Dear Sebastian
I ran the cmp3 for 8 subjects using parallel run on my PC ( ubuntu 20.04, 24 cores and 16 GB Ram). After running the program for about 4 hours , There were some warning massages in…
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Would be great to avoid having to independently specify a BIDS app instance in a separate Python module that sits alongside the YAML spec. This should be possible by just specifying arcana.tasks.bids.…
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Dear all,
I am using fmriprep version 2.1.0. in a python script and want to give in already processed freesurfer data:
` subprocess.run(['fmriprep', str(subject_path), str(path_output_fmriprep)…
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_Issue related to JOSS review: https://github.com/openjournals/joss-reviews/issues/4248_
It could be useful to add a sentence to the Installation instructions that mention the size of the docker im…
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1. autotop directories in the work folder should live inside another folder
2. 'seg_{modality}' doesn't make sense - vol? (to go with surf?)
3. xfm or transform folder to store warps? (or warps?)
4…