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khanlab
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hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
https://hippunfold.readthedocs.io
MIT License
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use naturalneighbour interpolation instead of linear barycentric
#306
jordandekraker
opened
4 hours ago
4
Naturalinterpolation
#305
jordandekraker
closed
4 hours ago
1
added coords for templateseg workflow
#304
jordandekraker
closed
4 hours ago
0
Wet-run test data
#303
jordandekraker
opened
5 days ago
0
AD branch
#302
Bradley-Karat
closed
6 days ago
0
WorkflowError in file /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/Snakefile, line 7: Config file must be given as JSON or YAML with keys at top level.
#301
VAMMGA
opened
1 week ago
2
vertex cleaning, especially for DG
#300
jordandekraker
closed
4 hours ago
3
ABAv3 mouse atlas+template
#299
jordandekraker
closed
2 weeks ago
0
expanded DG
#298
jordandekraker
closed
1 week ago
1
macaque atlas
#297
jordandekraker
closed
2 weeks ago
1
Alternative simple CLI for hippunfold
#296
akhanf
opened
3 weeks ago
0
atlas2parc
#295
jordandekraker
opened
3 weeks ago
0
anterior-posterior subdivisions option
#294
akhanf
opened
3 weeks ago
0
Docker untar permissions
#293
jordandekraker
closed
3 weeks ago
2
initial docs for templateseg
#292
jordandekraker
closed
3 weeks ago
1
UID Issue on Linux
#291
imolax
closed
3 weeks ago
2
Default Atlas
#290
yeriguc
opened
1 month ago
3
transform the native hippocapus metrics to the unfolded space
#289
raywell627
closed
2 months ago
4
Patch t2w
#288
jordandekraker
closed
3 months ago
0
Segmentation Inaccuracies with degenerated hippocampi
#287
mchoi99
opened
3 months ago
21
Incomplete hippocampal volumes extraction
#286
cyyyuyan
closed
2 months ago
1
Hippunfold errors out at 46%
#285
vnbcs
closed
3 months ago
3
Docpatch
#284
jordandekraker
closed
3 months ago
1
Hippunfold on pediatric data?
#283
oliver-xie
opened
3 months ago
3
errors while running hippunfold with slurm & snakemake
#282
vnbcs
closed
2 months ago
4
Template-based segmentation, and new templates (marmoset, macaque) redo
#281
akhanf
closed
2 months ago
18
fixes bugs introduced in download-osf PR
#280
akhanf
closed
4 months ago
0
Docs page for QC
#279
jordandekraker
closed
3 months ago
0
deleted - Template-based segmentation, and new templates (marmoset, macaque)
#278
akhanf
closed
4 months ago
0
Download resources from osf
#277
akhanf
closed
4 months ago
4
Update README.md
#276
akhanf
closed
4 months ago
0
Update requirements.txt in docs
#275
akhanf
closed
4 months ago
0
QC-related question
#274
oliver-xie
closed
4 months ago
3
How to know when subjects are fully processed?
#273
vnbcs
closed
4 months ago
1
another error on the ds002168 example dataset
#272
CogBrainHealthLab
closed
5 months ago
2
logo
#271
jordandekraker
closed
6 months ago
0
Add testing for other python versions
#270
kaitj
closed
4 months ago
2
new branch for cleaner PR
#269
jordandekraker
closed
7 months ago
2
resources to osf repo
#268
jordandekraker
closed
7 months ago
1
Sampling functional data for the dentate gyrus
#267
viktor-pfaffenrot
closed
8 months ago
2
Error running ds002168 (example) subject: Potentially with symbolic links?
#266
jlhanson5
closed
2 months ago
15
Update .readthedocs.yml
#265
akhanf
closed
8 months ago
0
Marmunfold
#264
akhanf
closed
2 months ago
19
adds missing T2w dHCP template to configfile
#263
akhanf
closed
9 months ago
0
Change in dependencies
#262
akhanf
closed
9 months ago
3
Fix session bug
#261
akhanf
closed
9 months ago
0
Latest tag
#260
akhanf
closed
9 months ago
0
Question: QC/unetf3d_dice.tsv
#259
andreifoldes
closed
9 months ago
1
Tutorial for transforming BigBrain to MNI
#258
andreifoldes
closed
9 months ago
3
sample functional data along surface
#257
viktor-pfaffenrot
closed
10 months ago
9
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