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khanlab
/
hippunfold
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
https://hippunfold.readthedocs.io
MIT License
47
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12
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sample functional data along surface
#257
viktor-pfaffenrot
closed
10 months ago
9
rename histologyReference2023 to multihist7
#256
akhanf
closed
9 months ago
2
fixes bug introduced in unfold_reg by reverting
#255
akhanf
closed
10 months ago
0
Naming of histologyReference2023
#254
akhanf
closed
9 months ago
3
label.gii and dlabel.nii files for subfields are corrupt in v1.3.0+
#253
akhanf
closed
10 months ago
0
Update README.md
#252
akhanf
closed
11 months ago
0
replace use of HTTP.remote() with wget
#251
akhanf
closed
11 months ago
0
Update README.md
#250
akhanf
closed
11 months ago
0
added neonate_v2 model, minor workflow update for it
#249
akhanf
closed
11 months ago
0
process HCP fmri on hippunfold results
#248
raywell627
closed
10 months ago
2
Download models inside workflow
#247
akhanf
closed
11 months ago
3
Update README.md
#246
akhanf
closed
11 months ago
0
zero value vertices on dentate gyrus
#245
HusBunia
closed
10 months ago
4
Synthseg model
#244
jordandekraker
closed
11 months ago
1
Synthseg model
#243
jordandekraker
closed
12 months ago
1
curvature was producing a few outlier extreme values
#242
jordandekraker
closed
11 months ago
0
DG surface contains self-intersection
#241
debinz
closed
10 months ago
6
Warps fix
#240
jordandekraker
closed
1 year ago
2
small bug present when visualizing with freeview
#239
akhanf
closed
10 months ago
1
quality check git action fix
#238
jordandekraker
closed
1 year ago
0
Fix quality action
#237
kaitj
closed
1 year ago
0
ensure use of Laplace coords follows gm mask
#236
jordandekraker
closed
1 year ago
0
Maskcontrain
#235
jordandekraker
closed
1 year ago
0
updates from master branch
#234
jordandekraker
closed
1 year ago
0
Converting inner/outer surface files to WM and pial format in Freesurfer
#233
khazarAhmadi
closed
1 year ago
3
T1T2w model file/url was missing from the config
#232
akhanf
closed
1 year ago
0
Bug in crop native space
#231
akhanf
closed
1 year ago
1
fix bug in crop native box
#230
akhanf
closed
1 year ago
1
Cyclic dependency on rule warp_gii_to_native.
#229
debinz
closed
1 year ago
11
Unfold reg
#228
jordandekraker
closed
11 months ago
5
Add accepted in eLife mention and link to readme
#227
akhanf
closed
1 year ago
0
fix for input type in dseg qc
#226
jordandekraker
closed
1 year ago
0
bugfix for cropref
#225
jordandekraker
closed
1 year ago
0
defined in mm instead of vox
#224
jordandekraker
closed
1 year ago
7
Note on autotop_deps
#223
jordandekraker
closed
1 year ago
0
Updates for Windows
#222
jordandekraker
closed
1 year ago
0
Download rule in the workflow
#221
akhanf
closed
11 months ago
3
aligns laplace_coords.py behaviour to laplace_coords_withinit.py
#220
jordandekraker
closed
1 year ago
3
update docs for running singularity in linux
#219
akhanf
closed
1 year ago
0
Windows docker instructions
#218
jordandekraker
closed
1 year ago
1
missing subfield.dlabel.gii outputs
#217
jordandekraker
closed
1 year ago
2
Added missing container for hippdwi_to_template
#216
kaitj
closed
1 year ago
2
resample_hippdwi_to_template container missing
#215
kaitj
closed
1 year ago
1
Update_documentation
#214
mcespedes99
closed
1 year ago
0
updated deploy workflow with bumpversion changes
#213
akhanf
closed
1 year ago
0
Add DAG generation to a github action
#212
akhanf
opened
1 year ago
0
bugfix: subfields label.gii wasn't being generated properly
#211
akhanf
closed
1 year ago
1
added --version to CLI (via snakebids.yml)
#210
akhanf
closed
1 year ago
0
Test data
#209
akhanf
closed
1 year ago
0
bugfix: subfield+tissue for new atlases, and tsv files
#208
akhanf
closed
1 year ago
1
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