khanlab / hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
https://hippunfold.readthedocs.io
MIT License
47 stars 12 forks source link

Windows docker instructions #218

Closed jordandekraker closed 1 year ago

jordandekraker commented 1 year ago

It took me a long time to find the right way to mount a directory from Windows, but in the end it should have a form something like this:

docker run -it --rm -v c:\Users\jordan\Downloads\ds002168:/bids:ro -v c:\Users\jordan\Downloads\ds002168_hippunfold:/output khanlab/hippunfold:latest /bids /output participant --modality T1w -n

TODO docs updates for Windows:

Git terminal (run on windows) or another bash emulator could avoid these issues but may be more trouble for installation.

Other than these challenges the container appears to be working!

jordandekraker commented 1 year ago

Addressed in https://github.com/khanlab/hippunfold/pull/222