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https://dx.doi.org/10.1093/nar/gkv1025
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https://doi.org/10.1101/163220
> Motivation: The powerful learning ability of a convolutional neural network (CNN) to perform functional classification of DNA/RNA sequences could provide valuable c…
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https://doi.org/10.1101/137828
> Understanding the relationship between protein structure and function is a fundamental problem in protein science. Given a protein of unknown function, fast identif…
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
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intron/spliceosom…
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Hi @ALL,
i wish to build the Gallus gallus on my own, but i can really understand the input file, like below picture:
![image](https://user-images.githubusercontent.com/41668708/114869797-fec3…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
6 months ago
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I recently learned about a phenomenon in which asparagine residues can undergo spontaneous intermolecular deamidation reactions to interconvert into a mixture of asparagine, aspartic acid, and isoaspa…
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> - Motivation
Alternative splice site selection is inherently competitive and the probability of a given splice site to be used also depends on the strength of neighboring sites. Here, we present a …
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It is quite common in our IMP modeling to apply "conditional" restraints, only some of which need to be satisfied. There is currently only partial support for such restraints in the dictionary, for ex…
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**Project:**
Transcription factor binding sites are important regulatory elements found upstream or downstream of a gene's transcription start site. These DNA-binding sites are non-exact, often repres…