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Either suggest edits or make a full PR to `biocthis` so improve the function `biocthis::use_bioc_github_action()`.
Improvements made manually in `r_workflows` include:
- Specifying R and Bioc ve…
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Hi Brian @bschilder,
I've just finished going through the docs & code. Thanks for pinging me about `rworkflows`. Overall, it's a very interesting project and I'm glad to see that `biocthis` was hel…
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It looks like the `master` branch was removed. Can this please be added back, as it breaks all GHA workflows that specify `@master`.
For example:
https://github.com/neurogenomics/EpiCompare/acti…
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The action https://github.com/pneuvial/adjclust/actions/workflows/R-CMD-check.yaml has never been working properly because the package depends on Bioconductor packages, see e.g.:
https://github.com…
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## Context
Caveat: new "non-standard" directory, see #21
https://community-bioc.slack.com/archives/C35G93GJH/p1661497933425919
> Hi, everyone. Does anyone have examples of pretty pkgdown docu…
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https://github.com/lcolladotor/biocthis/blob/341ae80706ecc2950e0a50bc36dc7416f2a5d173/inst/templates/check-bioc.yml#L87
I was having some problems with the workflow yaml today:
```
Error: Unabl…
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This would be similar to https://bioconductor.org/packages/release/data/experiment/html/scRNAseq.html or `spatialLIBD::fetch_data()` or http://bioconductor.org/packages/release/data/experiment/html/ST…
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[pkgdown site step](https://github.com/lcolladotor/biocthis/blob/341ae80706ecc2950e0a50bc36dc7416f2a5d173/.github/workflows/check-bioc.yml#L279) runs into error when using a Docker container.
## I…
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**Is your feature request related to a problem? Please describe.**
The current https://github.com/r-lib/actions/blob/master/examples/check-standard.yaml is not ideal for Bioconductor packages. R an…
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Hi @lcolladotor , I'm not completely sure if this is the right place for this, but I found out there have been some changes to GitHub permissions / authentication affecting the deploy action with `Jam…