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when execute the docker compose up -d show below problem:
![image](https://github.com/biocypher/pole/assets/3763474/ed38351c-c48f-474a-a81d-967debcb988f)
Container build service "build" didn't co…
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The comment below is an issue with neo4j not biocypher. Mentioning so (i) people is aware (ii) see if we are able to find a workaround
I discovered that somehow, at least on Windows, there is a max…
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Just realized, that sometimes the docstrings tend to become outdated, without that being noticeable (e.g. one parameter added to a function and docstring not adapted).
So it would be great to automat…
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Hi @slobentanzer
I am tying to build a knowledge graph on custom dataset.
I have created .ttl file and want to build knowledge graph.
Could you please guide me on using own ttl file for building gr…
a1012 updated
10 months ago
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Providing an input class with ID, type, properties fields is more transparent than using tuples that are not self-explanatory. This class would be used in the adapter to pass data to BioCypher and cou…
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We have traditionally not closed the issues we use on the component board to organise and share which adapters and pipelines we have in the ecosystem. However, this conflicts with the general use of i…
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Charlie Hoyt seems to still maintain PyBEL; not sure how many people use it, but since it is fairly low effort, we could include a PyBel-BioCypher adapter. https://github.com/cthoyt
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https://chatgse.streamlit.app/ fails on contact
```
ModuleNotFoundError: No module named 'neo4j_utils'
Traceback:
File "/home/adminuser/venv/lib/python3.10/site-packages/streamlit/runtime/scriptru…
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List adapted from #54.
- [ ] The [MAIT reference database](http://www.cbs.dtu.dk/services/MAIT_Match/MAIT_DB_update.php) with invariant CDR3
- [ ] huARdb https://academic.oup.com/nar/advance-ar…
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Let's assume I did some gene identifier remapping to harmonize several datasets (see #1). I want a way to make sure that if I rerun the same analysis in 2 years, I get *exactly* the same result (the d…