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scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
https://scirpy.scverse.org/en/latest/
BSD 3-Clause "New" or "Revised" License
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[pre-commit.ci] pre-commit autoupdate
#559
pre-commit-ci[bot]
closed
1 day ago
0
[pre-commit.ci] pre-commit autoupdate
#558
pre-commit-ci[bot]
closed
2 days ago
0
Filter clonotype clusters to be displayed by anndata.obs data
#557
felixpetschko
closed
2 days ago
7
Speed up anndata writing speed after define_clonotype_clusters
#556
felixpetschko
opened
2 weeks ago
3
ir.pp.ir_dist() performance on interactive versus batch jobs
#555
olivermccallion
opened
2 weeks ago
1
I think there is a typo here. Should be "Selects primary/secondary VJ/VDJ chains per cell"?
#554
sinaghadermarzi
opened
2 weeks ago
0
[pre-commit.ci] pre-commit autoupdate
#553
pre-commit-ci[bot]
closed
1 week ago
0
[pre-commit.ci] pre-commit autoupdate
#552
pre-commit-ci[bot]
closed
3 weeks ago
0
Unpin anndata
#551
grst
opened
3 weeks ago
0
[pre-commit.ci] pre-commit autoupdate
#550
pre-commit-ci[bot]
closed
4 weeks ago
0
Unpin anndata
#549
grst
opened
1 month ago
0
Refactor distance metric histogram
#548
grst
opened
1 month ago
0
Make parasail an optional dependency
#547
grst
closed
1 month ago
1
Drop support for Python 3.9
#546
grst
closed
1 month ago
1
Fix that pl.clonotype_network couldn't use non-standard obsm key
#545
grst
closed
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#544
pre-commit-ci[bot]
closed
1 month ago
0
ir.pl.clonotype_network doesn't use the right obsm entry
#543
LinearParadox
closed
1 month ago
1
BCR tutorial
#542
MKanetscheider
opened
1 month ago
7
Hamming distance implementation with numba.cuda (GPU)
#541
felixpetschko
opened
1 month ago
6
[pre-commit.ci] pre-commit autoupdate
#540
pre-commit-ci[bot]
closed
1 month ago
0
Get usable cpu count for numba
#539
grst
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#538
pre-commit-ci[bot]
closed
1 month ago
0
Chain_qc adaptation (isotypically included B cells)
#537
MKanetscheider
closed
1 month ago
1
Mutational load function (SHM)
#536
MKanetscheider
opened
1 month ago
4
Hill diversity profile
#535
MKanetscheider
opened
1 month ago
0
Logoplots
#534
MKanetscheider
opened
1 month ago
7
Error with define_clonotypes on small datasets
#533
leuschjanphilipp
closed
1 month ago
4
BCR related new functions
#532
MKanetscheider
closed
1 month ago
3
ir.pl.clonotype_network
#531
1w2y3x6078
closed
1 month ago
3
Thoughts on adding motif results to amino acid similarity?
#530
n-hal
opened
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#529
pre-commit-ci[bot]
closed
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#528
pre-commit-ci[bot]
closed
2 months ago
0
Fix cpu count detection
#527
grst
closed
2 months ago
0
Update CHANGELOG.md
#526
grst
closed
3 months ago
0
Numpy 2.0 compat
#525
grst
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#524
pre-commit-ci[bot]
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#523
pre-commit-ci[bot]
closed
3 months ago
0
TypeError: join() got an unexpected keyword argument 'validate'
#522
1w2y3x6078
closed
3 months ago
9
[pre-commit.ci] pre-commit autoupdate
#521
pre-commit-ci[bot]
closed
4 months ago
0
Remove data directory (was accidentically committed)
#520
grst
closed
4 months ago
0
Update template to v0.4.0
#519
scverse-bot
closed
3 months ago
0
Fix #517
#518
grst
closed
4 months ago
0
When running 'ir.tl.define_clonotypes' on MacOS14.4.1, I've got an Error:module 'os' has no attribute 'sched_getaffinity'
#517
jppQaQ
closed
4 months ago
2
Adding beta version of BCR vignette
#516
MKanetscheider
closed
1 month ago
2
[pre-commit.ci] pre-commit autoupdate
#515
pre-commit-ci[bot]
closed
4 months ago
0
[pre-commit.ci] pre-commit autoupdate
#514
pre-commit-ci[bot]
closed
4 months ago
0
[pre-commit.ci] pre-commit autoupdate
#513
pre-commit-ci[bot]
closed
5 months ago
0
Hamming distance implementation with Numba
#512
felixpetschko
closed
1 month ago
16
TCRdist performance improvements
#511
felixpetschko
closed
5 months ago
2
[pre-commit.ci] pre-commit autoupdate
#510
pre-commit-ci[bot]
closed
5 months ago
0
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