scverse scirpy issues - Githubissues

scverse / scirpy

A scanpy extension to analyse single-cell TCR and BCR data.

https://scirpy.scverse.org/en/latest/

BSD 3-Clause "New" or "Revised" License

220 stars 34 forks source link

issues

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TypeError: join() got an unexpected keyword argument 'validate'

#522 1w2y3x6078 closed 5 months ago
9
[pre-commit.ci] pre-commit autoupdate

#521 pre-commit-ci[bot] closed 5 months ago
0
Remove data directory (was accidentically committed)

#520 grst closed 6 months ago
0
Update template to v0.4.0

#519 scverse-bot closed 4 months ago
0
Fix #517

#518 grst closed 6 months ago
0
When running 'ir.tl.define_clonotypes' on MacOS14.4.1, I've got an Error:module 'os' has no attribute 'sched_getaffinity'

#517 jppQaQ closed 6 months ago
2
Adding beta version of BCR vignette

#516 MKanetscheider closed 3 months ago
2
[pre-commit.ci] pre-commit autoupdate

#515 pre-commit-ci[bot] closed 6 months ago
0
[pre-commit.ci] pre-commit autoupdate

#514 pre-commit-ci[bot] closed 6 months ago
0
[pre-commit.ci] pre-commit autoupdate

#513 pre-commit-ci[bot] closed 6 months ago
0
Hamming distance implementation with Numba

#512 felixpetschko closed 3 months ago
16
TCRdist performance improvements

#511 felixpetschko closed 6 months ago
2
[pre-commit.ci] pre-commit autoupdate

#510 pre-commit-ci[bot] closed 6 months ago
0
Optimize TCRdist metric

#509 grst closed 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#508 pre-commit-ci[bot] closed 7 months ago
0
clone definition purely using CDR3 sequence

#507 zktuong closed 2 months ago
3
Update CHANGELOG.md

#506 grst closed 7 months ago
0
[pre-commit.ci] pre-commit autoupdate

#505 pre-commit-ci[bot] closed 7 months ago
0
Fix set_obs throwing ValueError when Series aligns to MuData.

#504 grst closed 7 months ago
2
"read_10x_vdj" not loading data properly

#503 mwetzel7 closed 7 months ago
2
tcrdist draft version implemented

#502 felixpetschko closed 7 months ago
2
ir.tl.clonotype_modularity - ValueError: Length of values does not match length of index

#501 ggalletti2 closed 7 months ago
2
[pre-commit.ci] pre-commit autoupdate

#500 pre-commit-ci[bot] closed 7 months ago
1
Update D50 docstring

#499 grst closed 8 months ago
1
Fix n_jobs behavior

#498 grst closed 8 months ago
0
ir.tl.ir_query fails with error 'ValueError: max_workers must be greater than 0'

#497 olivermccallion closed 8 months ago
1
[pre-commit.ci] pre-commit autoupdate

#496 pre-commit-ci[bot] closed 8 months ago
1
Community tutorial page

#495 grst opened 8 months ago
0
Update template to v0.3.1

#494 scverse-bot closed 9 months ago
2
Sorting logic in `index_chains()`

#493 nh3 closed 8 months ago
3
[pre-commit.ci] pre-commit autoupdate

#492 pre-commit-ci[bot] closed 9 months ago
1
[pre-commit.ci] pre-commit autoupdate

#491 pre-commit-ci[bot] closed 9 months ago
0
Update changelog for v0.16

#490 grst closed 9 months ago
0
[pre-commit.ci] pre-commit autoupdate

#489 pre-commit-ci[bot] closed 9 months ago
0
Add the Morisita-Horn index for repertoire overlap similarity scores

#488 NicolasSompairac opened 9 months ago
1
Use umi_count instead of duplicate_count in compliance with AIRR v1.4

#487 grst closed 9 months ago
2
Make sure axes of nextwork plots don't have any ticks

#486 grst opened 9 months ago
0
Update changelog for v0.15 release

#485 grst closed 10 months ago
0
Fix incompatibility with scipy 1.12

#484 pre-commit-ci[bot] closed 10 months ago
0
Dandelion io

#483 amoschoomy closed 9 months ago
5
Fix conda ci

#482 grst closed 10 months ago
1
Speed up hamming distance calculation and add normalized hamming distance

#481 felixpetschko closed 6 months ago
1
[pre-commit.ci] pre-commit autoupdate

#480 pre-commit-ci[bot] closed 10 months ago
0
Large dataset tutorial

#479 grst opened 10 months ago
1
Where has UMI count for AIR chains gone?

#478 adamwoolfe closed 9 months ago
1
Fix incompatibility with adjustText 1.0

#477 grst closed 10 months ago
1
Calculate junction_aa in IEDB

#476 grst closed 10 months ago
2
Dandelion interoperability

#475 grst closed 9 months ago
0
Fix cutoff documentation of DistanceCalculator classes

#474 grst closed 10 months ago
1
Improve parallelism of ir_dist

#473 grst closed 10 months ago
4

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