scverse scirpy issues - Githubissues

scverse / scirpy

A scanpy extension to analyse single-cell TCR and BCR data.

https://scirpy.scverse.org/en/latest/

BSD 3-Clause "New" or "Revised" License

220 stars 34 forks source link

issues

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[pre-commit.ci] pre-commit autoupdate

#572 pre-commit-ci[bot] opened 1 day ago
0
[pre-commit.ci] pre-commit autoupdate

#571 pre-commit-ci[bot] closed 6 days ago
0
Fix index_chains method description

#570 grst closed 2 weeks ago
0
[pre-commit.ci] pre-commit autoupdate

#569 pre-commit-ci[bot] closed 2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#568 pre-commit-ci[bot] closed 2 weeks ago
0
ModuleNotFoundError: No module named 'Levenshtein'

#567 dansteiert closed 2 weeks ago
3
[pre-commit.ci] pre-commit autoupdate

#566 pre-commit-ci[bot] closed 4 weeks ago
0
Add Stephenson datasets

#565 grst closed 4 weeks ago
1
Fix _has_ir AwkwardArrayView edgecase

#564 grst closed 1 month ago
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no numpy.add overloads for custom types: AwkwardArrayView, AwkwardArrayView

#563 grst closed 1 month ago
0
Add optional dependencies to [test]

#562 grst closed 1 month ago
0
Dealing with alleles and multiple gene calls

#561 grst opened 1 month ago
6
[pre-commit.ci] pre-commit autoupdate

#560 pre-commit-ci[bot] closed 1 month ago
1
[pre-commit.ci] pre-commit autoupdate

#559 pre-commit-ci[bot] closed 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#558 pre-commit-ci[bot] closed 1 month ago
0
Filter clonotype clusters to be displayed by anndata.obs data

#557 felixpetschko closed 1 month ago
7
Speed up anndata writing speed after define_clonotype_clusters

#556 felixpetschko closed 1 week ago
5
ir.pp.ir_dist() performance on interactive versus batch jobs

#555 olivermccallion closed 2 weeks ago
2
I think there is a typo here. Should be "Selects primary/secondary VJ/VDJ chains per cell"?

#554 sinaghadermarzi closed 2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate

#553 pre-commit-ci[bot] closed 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#552 pre-commit-ci[bot] closed 2 months ago
0
Unpin anndata

#551 grst closed 2 weeks ago
0
[pre-commit.ci] pre-commit autoupdate

#550 pre-commit-ci[bot] closed 2 months ago
0
Unpin anndata

#549 grst closed 2 weeks ago
0
Refactor distance metric histogram

#548 grst opened 2 months ago
0
Make parasail an optional dependency

#547 grst closed 2 months ago
1
Drop support for Python 3.9

#546 grst closed 2 months ago
1
Fix that pl.clonotype_network couldn't use non-standard obsm key

#545 grst closed 2 months ago
0
[pre-commit.ci] pre-commit autoupdate

#544 pre-commit-ci[bot] closed 2 months ago
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ir.pl.clonotype_network doesn't use the right obsm entry

#543 LinearParadox closed 2 months ago
1
BCR tutorial

#542 MKanetscheider closed 2 weeks ago
17
GPU implementation of hamming distance

#541 felixpetschko opened 3 months ago
11
[pre-commit.ci] pre-commit autoupdate

#540 pre-commit-ci[bot] closed 3 months ago
0
Get usable cpu count for numba

#539 grst closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#538 pre-commit-ci[bot] closed 3 months ago
0
Chain_qc adaptation (isotypically included B cells)

#537 MKanetscheider closed 3 months ago
1
Mutational load function (SHM)

#536 MKanetscheider opened 3 months ago
5
Hill diversity profile

#535 MKanetscheider opened 3 months ago
3
Logoplots

#534 MKanetscheider opened 3 months ago
10
Error with define_clonotypes on small datasets

#533 leuschjanphilipp closed 3 months ago
4
BCR related new functions

#532 MKanetscheider closed 3 months ago
3
ir.pl.clonotype_network

#531 1w2y3x6078 closed 2 months ago
3
Thoughts on adding motif results to amino acid similarity?

#530 n-hal closed 1 month ago
2
[pre-commit.ci] pre-commit autoupdate

#529 pre-commit-ci[bot] closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#528 pre-commit-ci[bot] closed 4 months ago
0
Fix cpu count detection

#527 grst closed 4 months ago
0
Update CHANGELOG.md

#526 grst closed 4 months ago
0
Numpy 2.0 compat

#525 grst closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#524 pre-commit-ci[bot] closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#523 pre-commit-ci[bot] closed 5 months ago
0