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I have a table of the masses of each amino acid and their names but there doesn't seem to be any easy way of getting the table in https://biojulia.net/BioSequences.jl/stable/symbols/#Amino-acids-1. So…
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MWE:
```
$ export JULIA_CPU_TARGET=generic
$ julia --startup-file=no -q
julia> using HostCPUFeatures
julia> has_feature(Val{:x86_64_avx2}())
static(true)
```
This cause issues during preco…
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Elizabeth looks like you're on the right track, but I think you should do a hash/k-mer step (for speed up) to truly create some novel code this would be done as the "Directly map the RNA-seq reads to …
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The desire here is to close the `TranscodingStream` without closing the underlying buffer. This is documented in https://juliaio.github.io/TranscodingStreams.jl/latest/examples/#Explicitly-finish-tran…
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Can you support this? The ordinary socket could be read by `readuntil` and 'readline' funtions.
```sh
julia> readline(c)
ERROR: MbedTLS.SSLContext does not support byte I/O
Stacktrace:
[1] erro…
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To reduce weird behavior and facilitate streaming algorithms, CNVkit automatically sorts chromosomes in a way that makes sense for mammalian, prokaryotic, and plant genomes. The yeast genome is Very S…
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Dear @CiaranOMara
I haven't lost track of the existing issues, and will get around to resolving them!
However, I got sidetracked with a more fundamental issue: The BGZFStreams package is slow, …
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Hello,
Currently YAML.jl is able to parse a string (or a file) and it returns a parsed YAML document (or several YAML documents) as `Dict`.
When https://github.com/BioJulia/YAML.jl/pull/68 will …
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Hi JuliaComputing,
My name's Ben and I work on BioJulia, right now my efforts are focused on getting Evolutionary Genetics and Phylogenetics modules for Bio.jl. The phylogenetic module is getting wri…
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Hi all,
@Ward9250 and I had a chat about license choices on gitter. As we move to independent packages, maintainers may want to vary licenses from the default, very liberal MIT license. There are m…