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Hello,
DEPENDECIES document some dependencies for fusioncatcher but etc/configuration.cfg contains some entries for tools not documented.
eg:
not documented nor in DEPENDENCIES nor in tools/in…
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As I see in both files : at the line 145 of downloadservice.py
`downloader = DirectHTTPDownload("https", server, '/' ) `
and at the line 334 of download/direct.py
` return self.url + '/' + rfi…
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Hi,
I have a problem, few websites return a 301 or 302 HTTP code when I try to access to a file. I have to put manually the redirection link in the bank configuration to solve temporarily the problem…
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`biomaj-download` can't connect to a SFTP server except if the host fingerprint has first been added in the known hosts file (for instance by connecting with `ssh`).
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So far, BioMAJ email notication consists of a simple mail looking like this:
```
From: Author
Sent: lundi 9 mars 2020 01:27
To: John Doe
Subject: BANK[entrezgene] - STATUS[True] - UPDATE[True]…
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Hi,
I got the following error running biomaj2galaxy :
> File "/storage/galaxydev/biomaj/venv/lib/python2.7/site-packages/biomaj2galaxy/commands/add.py", line 204, in add
> ctx.gi.tool_data.…
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`FTPDownload.list` parses the listing according to the de facto standard for FTP servers. However some servers present the listing in a totally different manner hence they don't work with `FTPDownload…
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`FTPDownload` can handle `ftps://` url-schema (FTP with implicit SSL). However, there are some common problems with SSL: some servers have incorrect certificates or host identity, etc.
For example,…
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@osallou
I am trying to download file of size around 35 GB (to be more specific ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase//uniprot_trembl.fasta.gz) using biomaj. I configured 3 thre…
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when downloading a compressed file, after download, check archive (not corrupted).
If check is not ok, try to download again (like a download error)
This will avoid global download error and forc…