ndaniel fusioncatcher issues

ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

GNU General Public License v3.0

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issues

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Issue Encountered While Running FusionCatcher

#223 WANGW-z opened 2 days ago
0
Predicted_fused_transcripts and Predicted_fused_proteins columns are missing

#222 makarov-ccf opened 2 weeks ago
0
Error downloading Canis lupus familiaris genome from Ensembl

#221 SeungWWoo opened 2 weeks ago
0
get_synonyms.py fails to infer the right URL

#220 priesgo opened 1 month ago
1
Change --link hard to --link soft to be run in Tower

#219 projassanchez opened 5 months ago
0
Any plan to make a release incorporating EnSEML v110 - GENCODE v44 ?

#218 af8 opened 9 months ago
1
Python 2.7 to 3.0?

#217 jdjdj0202 opened 9 months ago
0
Bowtie2 and STAR cat different psl ?

#216 nihilee opened 10 months ago
0
Please add annotation of fusion breakpoint to predicted protein sequence

#215 GHosking-01 opened 10 months ago
0
Database build

#214 km-2021 opened 1 year ago
0
Error installing fastqtk for fusioncatcher

#213 pirateyoho opened 1 year ago
0
FusionCatcher misses an EGFR:EGFR fusion (deletion exon 2 to 7)

#212 eliasOnAWS opened 1 year ago
0
Issues installing with bioconda

#211 pirateyoho opened 1 year ago
0
Does Fusioncatcher filter results based on supporting reads?

#210 paulwittgenstein opened 1 year ago
0
Update add_custom_gene.py

#209 6EMNKEY opened 1 year ago
0
why fusioncatcher didn't work until the sencond run?

#208 windtalker6 opened 1 year ago
1
Added new path of velvet

#207 mmterpstra opened 1 year ago
0
Update get_genome.py to be able to download MT file of rattus_norvegicus

#206 BSC-Support-Team closed 1 year ago
1
Configuration file '' not found!

#205 kopardev closed 1 year ago
1
ERROR: Too long read sequence found.

#204 li1ba opened 1 year ago
0
fusioncatcher-build on mus_musculus issue

#203 PANX1233 closed 1 year ago
1
not-converted+

#202 hanxuelian opened 1 year ago
0
default number of CPUs

#201 EricDeveaud opened 1 year ago
0
Meaning of tags 't3, t4, t7' etc in fusion description column

#200 asmitagpta opened 2 years ago
2
Possibility of Python 3 Port

#199 greenbagels opened 2 years ago
2
Correct fusion reported but false positions for MYC gene and IGH@ locus

#198 pkerbs opened 2 years ago
1
Error due to ASCII-64/33 conversion at step 101

#197 pkerbs opened 2 years ago
4
Missing 5'- or 3'- genes in fusion prediction

#196 asmitagpta opened 2 years ago
1
rattus_norvegicus download fails

#195 hvelab opened 2 years ago
2
Bootstrap install of Velvet fails

#194 mflevine opened 2 years ago
1
ERROR: The build data not found in ... !

#193 nmc-ei opened 2 years ago
1
FusionCatcher keeps crashing at step 255

#192 rituparna-13 opened 2 years ago
5
Error message shared.KillSwitch.kill

#191 Coaxecva opened 2 years ago
6
Getting genome indices for specific ENSEMBL version

#190 zhuchcn opened 2 years ago
3
Download data using docker is not working as expected

#189 praveenraj2018 opened 3 years ago
1
limitSjdbInsertNsj error persists in Fusioncatcher/1.2

#188 sentisci closed 3 years ago
1
splitting of single-end reads into paired-end reads: how is it done?

#187 emariella closed 3 years ago
2
synonyms.txt

#186 readmanchiu closed 3 years ago
1
fusioncatcher-build downloads unwanted version of mouse reference

#185 anoronh4 closed 3 years ago
1
fastqtk => ERROR: Counter too small!

#184 ndaniel closed 3 years ago
0
libtbb.so.2 not found (by bowtie) whrn running fusioncatcher=1.20 installed from conda

#183 af8 opened 3 years ago
5
fusioncatcher-build fails for canis lupus familiaris, with IndexError: list index out of range

#182 jowkar opened 3 years ago
7
Question about the filter applied.

#181 dtomas1989 closed 3 years ago
3
Old references

#180 matq007 closed 3 years ago
1
missing tag for latest version (v1.30)

#179 boegel closed 3 years ago
2
add command line paramter to specify to use only the first N reads from the FASTQ

#178 ndaniel closed 3 years ago
1
ValueError for normal forms

#177 szilvajuhos closed 3 years ago
2
failed building database for my organism

#176 scseekers closed 3 years ago
1
Too many reads have been removed during the pre-filtering steps

#175 t-neumann closed 3 years ago
2
fusioncatcher biased against intronic fusion events?

#174 erprateek closed 3 years ago
3