ndaniel fusioncatcher issues

ndaniel / fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

GNU General Public License v3.0

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issues

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fc2vcf.py key error

#173 dBenedek closed 3 years ago
2
Fusion description tX (X=4,7, etc) is not definded

#172 ShahiRB closed 4 years ago
0
limitSjdbInsertNsj not being passed to STAR

#171 jacob-stauber closed 3 years ago
8
Changed how BBmap version is checked

#170 pbiology closed 3 years ago
1
Incorrect Coordinate for one fusion partner in otherwise valid fusion

#169 AlinaMH closed 3 years ago
6
fusioncatcher crashes on data without unmapped reads

#168 Redmar-van-den-Berg closed 3 years ago
6
Error message said bad quality while running bbduk

#167 yazuo0204 closed 3 years ago
1
Floating point exception (core dumped) during step 146

#166 evcon131 closed 3 years ago
4
Is gencode annotation available?

#165 yeswzc closed 4 years ago
2
IOError: [Errno 2] No such file or directory: banned_seq.fa

#164 evcon131 closed 4 years ago
1
confused by dependencies documentation vs configuration.cfg

#163 EricDeveaud closed 3 years ago
16
further parallelization

#162 anoronh4 closed 4 years ago
5
FusionCatcher misses a KMT2A-AFF1 fusion

#161 tom-sober closed 4 years ago
5
missing banned_seq.fa

#160 gaborbedics closed 4 years ago
1
missing metastasis.txt

#159 gaborbedics closed 4 years ago
1
intronic-intronic fusion

#158 oghzzang closed 4 years ago
1
Incorrect fusion coordinate in BCL2

#157 maressyl closed 3 years ago
3
BBMap causes test.sh error

#156 tom-sober closed 4 years ago
8
Error in Bowtie installation

#155 suhana13 closed 3 years ago
3
how to turn off the deduplication function of fusioncatcher

#154 ShannonDaddy closed 4 years ago
2
can fusioncatcher take alignment/junction output of STAR as input

#153 jiangzhijie-m2gen closed 4 years ago
1
ERROR: The input FASTQ file is not in a supported FASTQ format

#152 suhrig closed 4 years ago
4
what dose SPOTLIGNT mean?

#151 xiucz closed 4 years ago
5
typo in shebang.py

#150 steveharg closed 4 years ago
2
error during running script download-human-db.sh

#149 ConcettaDe4 closed 4 years ago
12
Inconsistent results between coordinate and sequance

#148 xiucz closed 4 years ago
5
Error with test dataset

#147 mdeloger closed 4 years ago
2
Wrong version of BBMAP found

#146 akesarwani closed 4 years ago
11
Coordinate lifted between hg38 and hg19

#145 xiucz closed 4 years ago
7
download-human-db.sh fail for Fusioncatchter v1.2

#144 akesarwani closed 4 years ago
5
Add support for output in VCF format

#143 ndaniel closed 3 years ago
1
Running fusioncatcher-build fails from within container

#142 hassanfa closed 4 years ago
8
pigz -p is always 1 & passing number of threads to fusioncatcher

#141 JoeEmendo closed 4 years ago
1
fusioncatcher-build error step 129

#140 JoeEmendo closed 4 years ago
12
Get paired-end fastq files

#139 cytcc123 closed 5 years ago
1
Java heap size too small

#138 ndaniel closed 4 years ago
2
Reads supporting fusion seem to only map to the 3' gene

#137 tb08 closed 5 years ago
5
source of banned list

#136 Sames-Jtudd closed 5 years ago
2
STAR seg-fault

#135 ndaniel closed 4 years ago
1
Step 88 creates empty output

#134 findlaycopley closed 5 years ago
6
Buffer size for SJ output is too small. Increase input parameter --limitOutSJcollapsed.

#133 heathergeiger closed 5 years ago
14
Number of junctions to be inserted on the fly is larger than the limitSjdbInsertNsj=2000000

#132 heathergeiger closed 5 years ago
2
Error when running fusioncatcher

#131 kokyriakidis closed 5 years ago
8
Fusioncatcher Processing .bam Files

#130 angelussong closed 5 years ago
2
ERROR: Workflow execution failed at step 91 while executing:

#129 xxxincode closed 5 years ago
4
Too few quality values for read

#128 dinggens closed 5 years ago
1
Converting Predicted_fused_transcript column from old version to new version

#127 amirkdv closed 5 years ago
2
Exon IDs missing when fusion not at exon boundary

#126 amirkdv closed 5 years ago
3
problem for fusioncatcher-build

#125 LEIyuechen closed 5 years ago
7
pigz issues with storage

#124 ahdee closed 5 years ago
0

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