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ndaniel
/
fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
GNU General Public License v3.0
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fc2vcf.py key error
#173
dBenedek
closed
3 years ago
2
Fusion description tX (X=4,7, etc) is not definded
#172
ShahiRB
closed
4 years ago
0
limitSjdbInsertNsj not being passed to STAR
#171
jacob-stauber
closed
3 years ago
8
Changed how BBmap version is checked
#170
pbiology
closed
3 years ago
1
Incorrect Coordinate for one fusion partner in otherwise valid fusion
#169
AlinaMH
closed
3 years ago
6
fusioncatcher crashes on data without unmapped reads
#168
Redmar-van-den-Berg
closed
3 years ago
6
Error message said bad quality while running bbduk
#167
yazuo0204
closed
3 years ago
1
Floating point exception (core dumped) during step 146
#166
evcon131
closed
3 years ago
4
Is gencode annotation available?
#165
yeswzc
closed
4 years ago
2
IOError: [Errno 2] No such file or directory: banned_seq.fa
#164
evcon131
closed
4 years ago
1
confused by dependencies documentation vs configuration.cfg
#163
EricDeveaud
closed
3 years ago
16
further parallelization
#162
anoronh4
closed
4 years ago
5
FusionCatcher misses a KMT2A-AFF1 fusion
#161
tom-sober
closed
4 years ago
5
missing banned_seq.fa
#160
gaborbedics
closed
4 years ago
1
missing metastasis.txt
#159
gaborbedics
closed
4 years ago
1
intronic-intronic fusion
#158
oghzzang
closed
4 years ago
1
Incorrect fusion coordinate in BCL2
#157
maressyl
closed
3 years ago
3
BBMap causes test.sh error
#156
tom-sober
closed
4 years ago
8
Error in Bowtie installation
#155
suhana13
closed
3 years ago
3
how to turn off the deduplication function of fusioncatcher
#154
ShannonDaddy
closed
4 years ago
2
can fusioncatcher take alignment/junction output of STAR as input
#153
jiangzhijie-m2gen
closed
4 years ago
1
ERROR: The input FASTQ file is not in a supported FASTQ format
#152
suhrig
closed
4 years ago
4
what dose SPOTLIGNT mean?
#151
xiucz
closed
4 years ago
5
typo in shebang.py
#150
steveharg
closed
4 years ago
2
error during running script download-human-db.sh
#149
ConcettaDe4
closed
4 years ago
12
Inconsistent results between coordinate and sequance
#148
xiucz
closed
4 years ago
5
Error with test dataset
#147
mdeloger
closed
4 years ago
2
Wrong version of BBMAP found
#146
akesarwani
closed
4 years ago
11
Coordinate lifted between hg38 and hg19
#145
xiucz
closed
4 years ago
7
download-human-db.sh fail for Fusioncatchter v1.2
#144
akesarwani
closed
4 years ago
5
Add support for output in VCF format
#143
ndaniel
closed
3 years ago
1
Running fusioncatcher-build fails from within container
#142
hassanfa
closed
4 years ago
8
pigz -p is always 1 & passing number of threads to fusioncatcher
#141
JoeEmendo
closed
4 years ago
1
fusioncatcher-build error step 129
#140
JoeEmendo
closed
4 years ago
12
Get paired-end fastq files
#139
cytcc123
closed
5 years ago
1
Java heap size too small
#138
ndaniel
closed
4 years ago
2
Reads supporting fusion seem to only map to the 3' gene
#137
tb08
closed
5 years ago
5
source of banned list
#136
Sames-Jtudd
closed
5 years ago
2
STAR seg-fault
#135
ndaniel
closed
4 years ago
1
Step 88 creates empty output
#134
findlaycopley
closed
5 years ago
6
Buffer size for SJ output is too small. Increase input parameter --limitOutSJcollapsed.
#133
heathergeiger
closed
5 years ago
14
Number of junctions to be inserted on the fly is larger than the limitSjdbInsertNsj=2000000
#132
heathergeiger
closed
5 years ago
2
Error when running fusioncatcher
#131
kokyriakidis
closed
5 years ago
8
Fusioncatcher Processing .bam Files
#130
angelussong
closed
5 years ago
2
ERROR: Workflow execution failed at step 91 while executing:
#129
xxxincode
closed
5 years ago
4
Too few quality values for read
#128
dinggens
closed
5 years ago
1
Converting Predicted_fused_transcript column from old version to new version
#127
amirkdv
closed
5 years ago
2
Exon IDs missing when fusion not at exon boundary
#126
amirkdv
closed
5 years ago
3
problem for fusioncatcher-build
#125
LEIyuechen
closed
5 years ago
7
pigz issues with storage
#124
ahdee
closed
5 years ago
0
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