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Here is an example of a sample for which one of the subsample taxa is being protected. The taxon and taxon_published are the same, the only difference is how the scientific rank is being appreviated i…
kyule updated
4 months ago
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In order for the NEON folks to get at our taxonomy via the API, we need to update the API to additionally return an array of the associated NEON taxon codes (since tid to neon_code is a one to many re…
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Characterize the Breast biorepository patients' triple-negative status and treatment status.
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## 1. Introduction
Electronic health record (EHR) is a patient medical record stored electronically. It serves much more purpose than information storage, however, and is not a direct transformatio…
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I attempted reharvesting some samples with errorMessage = 'NEON API failed to return sample data'
Some samples had errors regarding mismatched identifiers
However these errors are not being p…
kyule updated
6 months ago
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The registrations seem to be not present in the NMEDW.
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The harvester is now "successfully" harvesting samples when identifiers in the API are incomplete or incorrect relative to the manifest or current sample record.
For example:
A record was h…
kyule updated
6 months ago
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Improve auto-generated release notes by highlighting major changes and filtering the granular changes.
https://github.com/include-dcc/include-linkml/releases/tag/v3.0.0_rc1
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For occurrence that have been tagged as needing taxon level fuzzing protections, the displayed text of "identification protected" needs to be replaced with taxon order of the specimen identification. …
egbot updated
4 months ago
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**Description of the report** - every month I need to run a report that gives me a) accessions that have been received that month, b) total number of parts received that month, c) total number of extr…