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`chr2 89324416 Minda_77 N N]chrX:8495890] . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND7803_1,ONT_severus_BND9049_1,PB_Sniffles2.BND.299M1,ONT_Sniffles2.BND.290M1,ONT_r_135_1,PB_ID_21706_2,ONT_ID…
jzook updated
1 month ago
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`chr7 361414 Minda_128 N N]chr7:35959031] . PASS SVLEN=35597617;SVTYPE=BND;SUPP_VEC=ONT_severus_INV7498,PB_ID_26891_2,PB_r_310_1,ONT_r_203_1,ILL_MantaBND:2:38236:38237:0:0:0:1,ONT_ID_41850_2,PB_severu…
jzook updated
1 month ago
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`chr7 361856 Minda_129 N N]chr7:35959031] . PASS SVLEN=35597175;SVTYPE=BND;SUPP_VEC=PB_r_311_1,ONT_severus_INV7499,ONT_ID_41851_2,PB_ID_27115_2,ONT_r_202_1,ILL_MantaBND:2:38236:38237:1:0:0:1
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https:…
jzook updated
1 month ago
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The release workflow currently fails at one point in the github plugin, where the release success is handled.
Because all important steps (create git tag, create github release, publish release artif…
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`chr18 21493609 Minda_58 N [chr20:25499118[N . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND2961_2,ONT_severus_BND3354_2,PB_Sniffles2.BND.EAM11,ONT_ID_69853_2,ONT_Sniffles2.BND.10EM11,PB_ID_40696_2…
jzook updated
1 month ago
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`chr5 20023782 Minda_110 N N]chr5:155777976] . PASS SVLEN=135754194;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:95378:0:1:1:0:0:0,ILL_gridss90bb_818h,PB_r_282_1,ONT_r_180_1,PB_severus_INV5636,ONT_severus_INV6501…
jzook updated
1 month ago
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`chr18 28481424 Minda_60 N ]chrX:95812868]N . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND2976_2,PB_ID_40283_2,ONT_severus_BND3369_2,ONT_ID_69368_2,PB_r_192_1,ONT_r_114_1,ILL_gridss260fb_8331h,ILL…
jzook updated
1 month ago
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`chr3 139998693 Minda_97 N N]chr3:193903982] . PASS SVLEN=53905289;SVTYPE=BND;SUPP_VEC=PB_severus_INV4833,ONT_severus_INV5593,PB_ID_53317_2,ONT_ID_12247_2,PB_Sniffles2.INV.2ECM2,ONT_Sniffles2.INV.30AM…
jzook updated
1 month ago
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`chr3 139976414 Minda_96 N N]chr13:114353243] . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:2:46148:55281:0:1:0:1,PB_r_90_0,ONT_r_77_0,ILL_gridss63ff_2860h,PB_severus_BND1941_1,ONT_severus_BND2144_…
jzook updated
1 month ago
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Hi @tjiangHIT,
I used cuteSV to detect translocations in my sample and it seems that the output format differ from declared vcf4.2. According to the vcf specification https://samtools.github.io/hts-s…