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I used findmarkers() in Seurat to find DEGs I wonder which is the right metric to use pvalue or adj_pvalue
Flu09 updated
2 months ago
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Did a t-test with Bonferroni correction on column "33" in class zero which wound up with a corrected p-value < 3 x 10^-8. Tests for normality looked spotless. No way this is sampling variability.
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### Description
Chi Square test - Compare column proportions (z-test)
### Purpose
To compare column proportions to see is there statistical difference instead of relying on subjective evaluat…
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I need to double-check the critical values for two-tailed z-score
and ideally, to include a method for Bonferroni correction.
Some data may also need a log transformation.
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I'm a bit confused why the `powered_effect` is not calculated in the `StudentsTTest` but it's provided in `ZTest`.
The above is the data frame which I passed into both
```
stat_res_df = conf…
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Hi, I have another question, now about the function pathway_daa
I am running the following codes. While the first works normally, I receive the following error in the second:
daa_results
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Hi,
I'm having issues with the wilcox_test() and adjust_pvalue. If I use the p.adjust.method argument in the wilcox_test function, I get significant p values. However, if I use adjust_pvalue(), al…
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A rough draft of roadmap, feel free to edit:
- [ ] English version
- [ ] Random variables: Multivariable Gaussian, sub-Gaussian
- [ ] Concentration: Hoeffding, Azuma-Hoeffding, Bernstein
- Estim…
TURX updated
8 months ago
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Hi there. I'm attempting to run the selection analyses function with the command:
selectionanalyses(do_meta=FALSE,do_pairwise=TRUE,export='pdf', do_fsthet=FALSE, do_pcadapt=FALSE, do_outflank=FALSE…
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Tim's idea: Number of discoveries upon applying Bonferroni correction. Can then do comparisons among methods for the same dataset. Can apply metrics to group of all NTCs or go one NTC at a time.